G1349460


Basic Information

Item Value
gene id G1349460
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18797861 ~ 18799342 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1542706
TAACTTACAATATAGGTTGCTAACACAGGGTTGTGTGATATTTTAAATACAATAAGATACCAGTGAAAATTCAAACACCAAAAATGAAAGACTTGGAGTTAAAATCCAAAAATGGAATACTGGCAAAAGTGGTCTAAAACACCATGACAGCACCACTCAAGTGGACATATATAAATAAtgatcaatatgaccaataccgTGCACGTTGTCATACGGTTAAACTGAGCTGAGACTAAGTAGCCCAGAACACTCAACACGAAGACACAGAGGATTTTCCTTCACCATCCCTTTTGAACAGGTCTAAACCAATGCATTTTAATTGGAACACATtacataaataaaaacaaaactaACATTAATATTCTTCAGATGGCTACTGATTTAAACTCAAGGTCAGAAAGGCATAGGAGGTCGACAAGAGATTTAAACCACCTTTAGTGACGGACAATAAGTCAGCTTGTTAGGAGCAGGTCCACGTGGTGAAGGACCGTGGAgagttagaggagagagggcctATGCATTGTATAAGGCAATGCTGCTAGATGAATGTGTTACAGTAATCCAGACATTTGACTTCTTCTGTAGACTCTGGCTAATCTATATTCTTTCACTTGCTACACCATCTCTGATAAATCATAACAGTTAAATAAAATTACGGTAACATGTATATCGGAAACCCTCACTGTATCACACTTTCAATTGCATAATGTGTTTTTTCTGTCTAAACTAAAGATTTGAAAAATTACTGCAGAGAGGATAGGATCCTACATAGATACCGTCTCTTTGGATGCACCTCTTTGGATGTCTGTGTAGAGTGGGCTATATGTACAAGCAGTAAACAATTTGCAAGTACATATAAAATGTGAGCCACATGTACAGTAGGACCAAAGCACAAGCACTAAAGGGCCAGAATTACACAGACAGCCTGTGAATATGCAGTGGCTGCAAAGAGGGGCCAGTATTACAGTATGTGAAAAGTGTTTAATAGTGCTAGCCATTTTCATGTGCGTTCTCTTGTTTGAAGTCATCACAATGCTTTCTGTTTAAGGATATAGCCTTGTCCATtggcagggtgtgtgtgggggggattaAATTGGGGTGTGGTGTCTGTCACTGTCACATGATGAGAGGTAGGaggccagggagggagggagcagggggtGCAGTGATGGCTGTCAGAGTGCCAGGGTCCAGGCCGTTCACCGCCCTGCTGTAAACACAAAACAACATGGATTAGTCTGGTCGACTGAGGGTTAGGCAGCATCTCACTTGCTGGTCCTTACAAAATTAACCTTGCTGGATTCATATTATAAGGTGGTAAAACCATAGAACACATCAAATCTGCCTTATAATTAGCTAGGTATTACATGGCATTTTAAATAATGTGAGTTTT

Function

NR:

description
nuclear distribution protein nudE-like 1-A isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1542706 True 1393 lncRNA 0.40 2 18797861 18799342

Neighbor

gene id symbol gene type direction distance location
LOC110491517 LOC106579299 coding downstream 32327 18757567 ~ 18765534 (-)
LOC110491515 LOC106579303 coding downstream 118471 18672341 ~ 18679390 (-)
chmp2a LOC106579304 coding downstream 171421 18622633 ~ 18626440 (-)
LOC118939514 LOC106579307 coding downstream 191687 18604985 ~ 18606174 (-)
snf8 snf8 coding downstream 194732 18595651 ~ 18603129 (-)
LOC110491520 NA coding upstream 10574 18809916 ~ 18816182 (-)
acsf2 LOC106579292 coding upstream 24277 18823619 ~ 18853128 (-)
tap2t tap2a coding upstream 63680 18863022 ~ 18875578 (-)
slc16a5a LOC106579290 coding upstream 81060 18880402 ~ 18888619 (-)
kctd2 LOC106589267 coding upstream 99401 18898375 ~ 18909532 (-)
G1349431 NA non-coding downstream 15489 18745229 ~ 18782372 (-)
G1349378 NA non-coding downstream 142353 18654874 ~ 18655508 (-)
G1349368 NA non-coding downstream 161970 18635269 ~ 18635891 (-)
G1349367 LOC106579302 non-coding downstream 162973 18634476 ~ 18634888 (-)
G1349365 LOC106579302 non-coding downstream 164012 18633507 ~ 18633849 (-)
G1349462 NA non-coding upstream 3005 18802347 ~ 18802617 (-)
G1349466 NA non-coding upstream 10169 18809511 ~ 18809746 (-)
G1349473 armc7 non-coding upstream 17696 18817038 ~ 18821214 (-)
G1349366 NA other downstream 163456 18634031 ~ 18634405 (-)
prr15lb atd4b other downstream 374675 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1405907 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1601732 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1868429 16924522 ~ 16929432 (-)
LOC110491541 LOC106579266 other upstream 521528 19310970 ~ 19325094 (-)
G1349896 NA other upstream 661699 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 892350 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1531058 20330400 ~ 20334029 (-)
LOC110491585 NA other upstream 1840884 20640226 ~ 20650176 (-)

Expression


Co-expression Network