G1349530


Basic Information

Item Value
gene id G1349530
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18952847 ~ 18954943 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1542781
ttTACTGGCGAAATATGTATGGAAGCTTATCCATACCATATCCTCAATCAATGTAGATAAAAAATAATCGACATAGCCATTTCATGACATACCTTCAGTTTCAAACATTCACTGGAGAATGTCATATAGTTGCGTAATATGTTTGAAGGATAGACATTTTCTACTCAGGCTTTCAAACGTCGCCTTGAACAGCTGTGTTGCCAGCATCCTACCAGCAGAGAGAGCTGTTTAGCAGGACATTCAGTTAACTTTCAGCCATAACATTGCTGCCCCCGCACTGCACAAGCTTTTTAGGGTGGCCCATTCGCAGTCTCTGGCTAGGGAGTACTGCGGAGCTATCTGTGATCGTTGACAgatagttctgtgtgtgtgtgtgtgcgcgcgcgtgtgtgcgcgcgAATGCGTACATCTGAGGAGATGTGTTTTTGTTCTGTAGGTTCGTGAATGTCATTGAATGCAGTATGCTGCGACCTGGATGACCTGCTGTTCTACTAAGGAGCCTATTTAAGGAATGTGGCTGAGGAGGATATTCTAGCCGGCAGATTCATGTAATGTTTTGAAGCAGGAATGGTTTATCCAGCTGTGTCCATCGCATGTAGTTACCTTGCTGAAAAAAAAATATCTGTACAATTTTAGTACAGACAATTGAATGTTAAGTCGAAGTTTCACTTGGTGTATTTTGCCTCTCGTCTTTTCCTATCTCACTTCAGCTATTTTTCCATTTGTCACCTTCCTTTTCCATGATCTCTTTCCACTCCAACCTCATACCGTCTCTATTTTTCCCCTtcactcatcctcctctctcgcGTCACTTCCTTTCCCCCTTGTCAGTTTGCTCTGCCCTCTGTCTCAGTCATCATCTCACTGCTATCACTCTGCTACACCATCTTTTGGGAAGCTGCCTTCATCATCATTTGCTTGTGTATATTGTTACTATTACTGATGACATATACCTTGAATTGTATTGTAACTTGATGTTACTGCTGTGATATTACTGCTTGGTACTTGTATTTACTGATAGATGTTTGACACTTGTGGAATATGTGATCAGGTTAGTCTATCACAGAAGGACATGTCACCTCGGGACATTGGAGGGTACAAGGTATGAGGGCCCTTTACATACAAATGGACGTTGTGTAGTTCAATCAACAGGTGAATCACACTGAAAATGTCATCTTCGACACACTATTTCTTCATATGTTGGGGTCTATGCAGTACTTGCCCTGTTCCCTCTGGCCCAGGCACTAACCATGAGGGAGAGAGGCACAGACAGTTTGATACGGTACGCTGTCTGTTGTACAGCAGTATGATAGTCAGGACTCCGCGTCAAGCTCAGCGAGCTCTCTATGCCCCACCCTGCCACCCCGCCCCCTCTGACGTTATCACAGAGCAGCTGCAGGGTCTCCATGGCACTGGTTTGCATGGAAACCGCTAGTTCCCTCCAAGTATATCAAATGTGCCTATTTGATTGTGACATTTCCGGGAAATCAAATCTAAATGTTGGCTCCTTGATACTGAAATGAAAGCCTAGGTGTTACTGTATGTTTGACCCTTTCCCAGCCAGCACTTCTGAATGTGacatgtgtgtatatactgtatatatacagcatGAGATAATATTATAATGGTCTGCTTTCCTTTGTATTATGTTTAGAGTATTTAATGAAAGGTTAATATATAGAACAACATTTTTGTCCTGCAGTTCATtgtcatgatttttttttaaattataaagcTGAATGAAGGAAAAGTTGTTGTATTTATGCTGTTTTCTGCTCATGTGTTGTAGACACCACCCCAAGCCACCAATGCATTCAAAACTGTGATATAGTGTACTACAGTGGGGTTCTGACTGATTTCAGTTTTCTTAGACTGCTGCCAAGGAGAGACGTTTGAAATGTTTTTACTTGGGTAGTTCTACTCATTTTTAGCTGTACACGTGTCGACTGCCTGTTAAAACCTCACTTCTTTAAGGAAACATTGTTTGTATATGAGCTCTTCTGGGGAGGCATAGCGGGGAAAATAAAAGTGTTTCAGAAAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1542781 True 2044 lncRNA 0.42 2 18952847 18954943

Neighbor

gene id symbol gene type direction distance location
LOC110491527 LOC106579286 coding downstream 2203 18937855 ~ 18950644 (-)
kctd2 LOC106589267 coding downstream 43315 18898375 ~ 18909532 (-)
slc16a5a LOC106579290 coding downstream 64228 18880402 ~ 18888619 (-)
tap2t tap2a coding downstream 77269 18863022 ~ 18875578 (-)
acsf2 LOC106579292 coding downstream 99719 18823619 ~ 18853128 (-)
LOC110491528 LOC106579284 coding upstream 589 18955532 ~ 19022655 (-)
LOC110491529 LOC106579281 coding upstream 152096 19107039 ~ 19126035 (-)
LOC110491536 lzts2 coding upstream 209749 19164692 ~ 19210407 (-)
twnk LOC106579274 coding upstream 278008 19232951 ~ 19239241 (-)
sema4gb sema4g coding upstream 289167 19244110 ~ 19279335 (-)
G1349479 NA non-coding downstream 36718 18915642 ~ 18916129 (-)
G1349473 armc7 non-coding downstream 131633 18817038 ~ 18821214 (-)
LOC110491520 NA non-coding downstream 136820 18809916 ~ 18816182 (-)
G1349466 NA non-coding downstream 143101 18809511 ~ 18809746 (-)
G1349563 NA non-coding upstream 68220 19023163 ~ 19023558 (-)
G1349568 NA non-coding upstream 73465 19028408 ~ 19029256 (-)
G1349569 NA non-coding upstream 74735 19029678 ~ 19029879 (-)
G1349597 NA non-coding upstream 104969 19059912 ~ 19064716 (-)
G1349580 LOC106579282 non-coding upstream 150506 19105449 ~ 19106491 (-)
G1349366 NA other downstream 318442 18634031 ~ 18634405 (-)
prr15lb atd4b other downstream 529661 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1560893 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1756718 17195330 ~ 17196129 (-)
G1347067 NA other downstream 2023415 16924522 ~ 16929432 (-)
LOC110491541 LOC106579266 other upstream 365927 19310970 ~ 19325094 (-)
G1349896 NA other upstream 506098 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 736749 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1375457 20330400 ~ 20334029 (-)
LOC110491585 NA other upstream 1685283 20640226 ~ 20650176 (-)

Expression


Co-expression Network