G1350297


Basic Information

Item Value
gene id G1350297
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20079457 ~ 20079816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1543638
tcattataagcatctccaatccaaaattaaatctagaatcggcttcctattttgcaacaaagcctccttctctgacgctgccaaacataccctcgtagaactgactatcttaccgatcctcaacttcggcgatgacatttacaaaatagcctccaacactctactcagcaaactacatgcagtctatcacagtaacATCTGtttcatccccaaagccaacacctactttggccgcctttccttccagttctctgctgccaatgactggaacgaattgcaaaaatcgctgaagttggagactcatatctccctcactaactttaaacatcagctatcagatcgctgcagctgtacacagcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1543638 True 360 lncRNA 0.44 1 20079457 20079816

Neighbor

gene id symbol gene type direction distance location
lrrc3ca LOC106579382 coding upstream 5898 20059264 ~ 20073559 (+)
LOC110491550 LOC106579260 coding upstream 450337 19624195 ~ 19629120 (+)
LOC110491549 LOC106579354 coding upstream 455928 19588366 ~ 19623529 (+)
itga3b itga3 coding upstream 530094 19492541 ~ 19549363 (+)
LOC110491544 dlx4b coding upstream 649799 19424111 ~ 19429658 (+)
csf3a LOC106579381 coding downstream 2732 20082539 ~ 20085438 (+)
LOC118939518 NA coding downstream 28257 20108073 ~ 20109188 (+)
dnah3 dnah3 coding downstream 154188 20234004 ~ 20282891 (+)
dcun1d3 LOC106579247 coding downstream 210417 20290233 ~ 20300355 (+)
LOC110491565 LOC106579245 coding downstream 220694 20300510 ~ 20330315 (+)
G1350294 NA non-coding upstream 3693 20075493 ~ 20075764 (+)
G1350276 top2a non-coding upstream 25380 20049079 ~ 20054077 (+)
G1350110 NA non-coding upstream 272352 19806255 ~ 19807105 (+)
G1350077 NA non-coding upstream 314225 19759658 ~ 19765232 (+)
G1350071 NA non-coding upstream 333934 19745218 ~ 19745523 (+)
G1350300 NA non-coding downstream 6740 20086556 ~ 20086846 (+)
G1350303 NA non-coding downstream 9933 20089749 ~ 20090153 (+)
G1350316 NA non-coding downstream 35702 20115518 ~ 20115774 (+)
G1350764 NA non-coding downstream 116122 20195938 ~ 20196411 (+)
G1350275 NA other upstream 41479 20030730 ~ 20037978 (+)
G1350066 NA other upstream 341423 19737162 ~ 19738034 (+)
LOC110491534 LOC105006846 other upstream 937780 19138817 ~ 19141680 (+)
LOC110491516 LOC106589273 other upstream 1319037 18682058 ~ 18760420 (+)
G1348897 LOC106579309 other upstream 1524005 18555177 ~ 18555452 (+)
G1351274 NA other downstream 1140949 21220765 ~ 21221147 (+)
G1351366 LOC106579206 other downstream 1322411 21402227 ~ 21405117 (+)
G1351501 LOC106579196 other downstream 1599408 21679224 ~ 21680881 (+)
LOC110491629 LOC106579195 other downstream 1919541 21727617 ~ 22001169 (+)
G1353021 NA other downstream 2552063 22631879 ~ 22632305 (+)

Expression


Co-expression Network