G1351844 (LOC106579242)


Basic Information

Item Value
gene id G1351844
gene name LOC106579242
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20394582 ~ 20402250 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1545391
AAATCCCAACATTTGTGGCAACTGCAGATAGACACTAAGGCAGGGGTGTCAAATCAACCTTGGAGGGCGTGGTGTCTGTAGGTTTTTGGTTgttcctttcaattaagccctACACAACTAGGTGTGGGGAGTTCCTTAATTCATTCATCAAATACAAGGAAGGAGCAAAAACCCGCaaacactcggccctccgtggaatgagtttgacacctgtgctTCGAGGCAACAAACATTTCAAATACAAGCACAAGTCAGAAAAGTCTACCATAATTCTAGCCCGCTTTTctttttttcatttaaaaaacacaTACACTATGGATAACTTTTAAACATTAAAAGATTAAAAGTAGTACTTGCATTATATTACACATTTGTATAAATAGTACTTTGAGAAAGTGTATCTTAAAAAATACTTAACATCAAATTCCATCCAAAAGTAAAGTGGAATGTACAGCGAGGTTCATAATATTCGGACAGTAGCATTTCAGGGTGGGTCCTAGAGGGACTGATTCATgtggaagtgttcagaaacattctAATTTGCATATGTGActcaaatgacacaatacattattcaccattcatttctattgggcacaaaataatctgaaacacaaccaaaacaaactgcaaatgcatccagcAAGTttggagtcacaagcttgatgcaaacattgcatgctaggaatatgggaccaaatattgaacgtttgactactttaatacacaagttGATTTGTCCCCATACTTTTAATTTACtaaacttggggggggggggggggactaggtACAAAAAtggttcacccaatatggatCAAAAGACCCACAAATTAaatctgacagtctgcactttaaccccaTAGACATTTTTAAAGcggtggagtacagagccaaaacaacaaaaCTCACTATGTCAAGTTCATGGCTCATATCCTCATCAACAGACAAAATAAAGTTGGATACGGAGCCACTTCGAAACATTTCACTTACATTAAACTGACTCAAAACCAATAGGCTCAAGTAAAAGGAAGCTAAATTGAAATCATTCATGCTCTGATGAATGTCTGACGACCTAAAGCACAGCCTAAAGAAATTGGAAATTGTGTATTGATCCTGAGTGTGCGGAGATGAATTTTCCAGCTTCAAACAGGTGCTCGTGCTCCTATACTGATCAAATTGATACACTGATACTGTGCTTTGTCAAAATCCCTAAGGCTCAAACTGTTGTTTATAAGTGAGATGtgttgccaaaatgttcaaaCCTGCAACCCACCTATTGTGTTTTTCCACACCACTGTTATGTTTAACATCCCATACttggttaaatatatattttttaacctttatttaactaggcaagtcagttaaagaactaattcttattttcaatgacggcctaggaactgcctgttcaggggcagaacgacagatttgtac
>TU1545392
AAATCCCAACATTTGTGGCAACTGCAGATAGACACTAAGGCAGGGGTGTCAAATCAACCTTGGAGGGCGTGGTGTCTGTAGGTTTTTGGTTgttcctttcaattaagccctACACAACTAGGTGTGGGGAGTTCCTTAATTCATTCATCAAATACAAGGAAGGAGCAAAAACCCGCaaacactcggccctccgtggaatgagtttgacacctgtgctTCGAGGCAACAAACATTTCAAATACAAGCACAAGTCAGAAAAGTCTACCATAATTCTAGCCCGCTTTTctttttttcatttaaaaaacacaTACACTATGGATAACTTTTAAACATTAAAAGATTAAAAGTAGTACTTGCATTATATTACACATTTGTATAAATAGTACTTTGAGAAAGTGTATCTTAAAAAATACTTAACATCAAATTCCATCCAAAAGTAAAGTGGAATGTACAGCGAGGTTCATAATATTCGGACAGTAGCATTTCAGGGTGGGTCCTAGAGGGACTGATTCATgtggaagtgttcagaaacattctAATTTGCATATGTGActcaaatgacacaatacattattcaccattcatttctattgggcacaaaataatctgaaacacaaccaaaacaaactgcaaatgcatccagcAAGTttggagtcacaagcttgatgcaaacattgcatgctaggaatatgggaccaaatattgaacgtttgactactttaatacacaagttGATTTGTCCCCATACTTTTAATTTACtaaacttggggggggggggggggactaggtACAAAAAtggttcacccaatatggatCAAAAGACCCACAAATTAaatctgacagtctgcactttaaccccaTAGACATTTTTAAAGcggtggagtacagagccaaaacaacaaaaCTCACTATGTCAAGTTCATGGCTCATATCCTCATCAACAGACAAAATAAAGTTGGATACGGAGCCACTTCGAAACATTTCACTTACATTAAACTGACTCAAAACCAATAGGCTCAAGTAAAAGGAAGCTAAATTGAAATCATTCATGCTCTGATGAATGTCTGACGACCTAAAGCACAGCCTAAAGAAATTGGAAATTGTGTATTGATCCTGAGTGTGCGGAGATGAATTTTCCAGCTTCAAACAGGTGCTCGTGCTCCTATACTGATCAAATTGATACACTGATACTGTGCTTTGTCAAAATCCCTAAGGCTCAAACTGTTGTTTATAAGTGAGATGtgttgccaaaatgttcaaaCCTGCAACCCACCTATTGTGTTTTTCCACACCACTGTTATGTTTAACATCCCATACttggttaaatatatattttttaacctttatttaactaggcaagtcagttaaagaactaattcttattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcggggattcgaacttgcaacctttcggttactagtccaaagcgctaaccactaggctaccctgccgccccaaggctCATGATATGGGGTGGTAAAGAACTCTTGGACTGGAATATTCCCTTCCACCACAGGTTGGGCAGAAAAGTATAGTTCCATTGATTGTTTCAAAGTGAAAAGCAGGAAAAATGACGTATTACCAACAAACTGGCACAATATACAATTTGGCAAGGATCGTTAATATTTAGGCTCAGAAAAACAAATTGCCATTTTTCAAGTGAGTGGATGACTTCTATTCTGTATGGGAATTATTACTGAAGGCAAACAGGAAAATATTTTGTCACCCATTTTGCATCTGCATTCACCAAGTTACCTCAACACATATTTGCAGGACATGTTACAGGTCTGTGTAACTGCTTTCGCTTTGCAACACAATCGTACAGTGGAACTATACTTTTCCACCCAACCTGTGGTGGGAGGGAATATTCCAGTCCTTAAGAGTTCTCTACCGCCCCATATCATGAGCCTTATTATCTGTAAACAACCAAGTAAAGTGGTGTGGAAAAACACATTAGGTGTTTTTTGAGGCAACGTCTTGGCAACACATATCTCCTCACTTATGAACAGTTTGAGCCTTAGGGATGTTACTGATAAATCAGTTTTTCACCCCTCTGGAATATAgcattaaaaaaatgaaatgtaatCCAACATGGCTGCATTCATATtatttaaaataaagaaaacatcTGAAAGCAGAGGATCTTTTAAAACTagtaattttatctttaaaatatatttttcaatgtATACGTTAGTATACATTCTTTTGTGGTACCATGATGTAACATCTGACATCAAGCAGCTCATATTTCCCTCTTTTAGTCTGTTTTCTCCTTGTTTCCTCCCCCTCACACGCTAGTTGAATCCTCTACATCTTCTGCCCCTTCCCTCTGTGGGAGGAGCCGGAGGTTCTCCTCGGCCAATGGCGAGGGAGAATCCTTAGGTATTCTATTCCTTTCCAGGTGTTCGTCCAATAGGGCGGCTACGGGGGTGTCACATTCCACAGTGCTGCACTTAGTGTATACGCCCCCCATGTCGGTTCCCAGGCCACTTCCTATGGAGTTGCGTCTAGCTCTGTTCCTCAGGGTGGAGTGGATGTAGCCCAGGGGAACAGGCAACGTGGCGAATATGATCAAAACAGCCAAGACACCCAGGGCCCAGTCAGGGTAGTCCAGAGTCTCCT

Function

NR:

description
sodium-dependent neutral amino acid transporter B(0)AT2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1545391 False 1437 lncRNA 0.38 3 20394582 20402250
TU1545392 True 2697 lncRNA 0.40 2 20399528 20402250

Neighbor

gene id symbol gene type direction distance location
LOC110491569 LOC106579243 coding downstream 28018 20353882 ~ 20366564 (-)
fam234a fam234a coding downstream 47091 20339109 ~ 20347491 (-)
LOC110491567 LOC106579249 coding downstream 60553 20330400 ~ 20334029 (-)
LOC110491568 NA coding downstream 107618 20285809 ~ 20286964 (-)
kcnj12a LOC106579252 coding downstream 226940 20153681 ~ 20167642 (-)
LOC110491577 LOC106579241 coding upstream 58874 20461124 ~ 20469565 (-)
LOC110491584 cxb5 coding upstream 221638 20623888 ~ 20625318 (-)
znf668 znf668 coding upstream 223486 20625736 ~ 20629535 (-)
LOC110491585 NA coding upstream 238246 20640226 ~ 20650176 (-)
rnf40 rnf40 coding upstream 249115 20651365 ~ 20664781 (-)
G1351832 LOC106579242 non-coding downstream 8357 20377556 ~ 20386225 (-)
G1351830 NA non-coding downstream 19049 20375252 ~ 20375533 (-)
G1351816 NA non-coding downstream 82148 20311425 ~ 20312434 (-)
G1351804 dnah3 non-coding downstream 113326 20280826 ~ 20281256 (-)
G1351802 NA non-coding downstream 113815 20280427 ~ 20280767 (-)
G1351848 NA non-coding upstream 2342 20404592 ~ 20404827 (-)
G1351852 NA non-coding upstream 12922 20415172 ~ 20415404 (-)
G1351854 NA non-coding upstream 14626 20416876 ~ 20417180 (-)
G1351859 NA non-coding upstream 22678 20424928 ~ 20425158 (-)
G1351951 NA non-coding upstream 181769 20584019 ~ 20586755 (-)
LOC110491553 LOC106579383 other downstream 696924 19691616 ~ 19697840 (-)
G1349896 NA other downstream 932767 19461041 ~ 19461815 (-)
LOC110491541 LOC106579266 other downstream 1069528 19310970 ~ 19325094 (-)
G1349366 NA other downstream 1760177 18634031 ~ 18634405 (-)
h3f3d LOC107388308 other upstream 418449 20820699 ~ 20823171 (-)
G1352220 LOC106582599 other upstream 807213 21209463 ~ 21210794 (-)
si:ch211-183d21.3 LOC106579210 other upstream 858814 21255836 ~ 21288348 (-)
capn15 LOC106579196 other upstream 1278179 21640601 ~ 21725046 (-)

Expression


Co-expression Network