G1350939


Basic Information

Item Value
gene id G1350939
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20579174 ~ 20606047 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1544392
ctctcaaccagcttcacctggaatgcttttccaacagtcttgaaggatttcccacatatgctgggcacttgttggctgcttttccttcgctctgcagtccaactcatcccaaaccatctcaaatgggttgaggttgggtgattgtggaggccaggtcatctgatgcagcactccatcactctccttcttggtcaaatagcctttacacagcttggaggtgtgtcgggtcattgtcctgttgaaaaacaaatgatagtcccactaagcccaaaccagatgggatggcatatcgctgcagaatgctgtggtagtcatgctggttaagtgtgctttgaattctaaataaatcactgacagtgtcaccagcaaagcaccaccacaccatcacacctcctccatgcttcacagtaggaaccacacatgcagagataatccattcacctactctgcatcttacaaagacatggtggttggaaccaaaaatctcaaatttggactcatcagaccaaaggacagatttccaccggtctaatgtccatcgctcgtgtttcttggcccaagcaagtctcttcttcttattggtgtcctttagtggtggtttctttgcagcaattcgaccatgaaagcctgattcacgcagtctcctctgaacagttgatgttgagatgtgtctgttacttgaactctgtgaagcattttttgggggctgcattctgaggtgcagttaactgtaatgaacttatcgtctgcagcagaggtaactctgggtcttcctttcctgtggcggtcctcatgagagtcagtttcatcatagc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1544392 True 815 lncRNA 0.47 2 20579174 20606047

Neighbor

gene id symbol gene type direction distance location
LOC110492850 LOC106579239 coding upstream 8123 20511389 ~ 20571051 (+)
LOC110491576 LOC106579380 coding upstream 124811 20431846 ~ 20454363 (+)
LOC110491573 LOC106579242 coding upstream 176899 20377674 ~ 20402275 (+)
LOC110491572 LOC106579244 coding upstream 224804 20346778 ~ 20354373 (+)
LOC110491565 LOC106579245 coding upstream 248859 20300510 ~ 20330315 (+)
znf646 LOC106579233 coding downstream 23503 20629550 ~ 20638991 (+)
phkg2 phkg2 coding downstream 58967 20665014 ~ 20679309 (+)
si:dkey-220f10.4 LOC106579379 coding downstream 75604 20681651 ~ 20688683 (+)
LOC118939613 NA coding downstream 77741 20683788 ~ 20683916 (+)
LOC110492884 LOC106579378 coding downstream 102982 20709029 ~ 20713709 (+)
G1350891 NA non-coding upstream 106070 20472879 ~ 20473104 (+)
G1350890 NA non-coding upstream 107759 20470971 ~ 20471415 (+)
G1350870 LOC106579309 non-coding upstream 121108 20454812 ~ 20458066 (+)
G1350862 NA non-coding upstream 149968 20428880 ~ 20429206 (+)
G1350840 NA non-coding upstream 203753 20375155 ~ 20375421 (+)
G1350970 NA non-coding downstream 41368 20647415 ~ 20650088 (+)
G1351007 NA non-coding downstream 127475 20733522 ~ 20734122 (+)
G1350964 NA non-coding downstream 130175 20736222 ~ 20740894 (+)
G1350965 NA non-coding downstream 179591 20785638 ~ 20791850 (+)
c16h16orf91 NA non-coding downstream 211411 20817422 ~ 20819054 (+)
G1350275 NA other upstream 541196 20030730 ~ 20037978 (+)
G1350066 NA other upstream 841140 19737162 ~ 19738034 (+)
LOC110491534 LOC105006846 other upstream 1437497 19138817 ~ 19141680 (+)
LOC110491516 LOC106589273 other upstream 1818754 18682058 ~ 18760420 (+)
G1348897 LOC106579309 other upstream 2023722 18555177 ~ 18555452 (+)
G1351274 NA other downstream 614718 21220765 ~ 21221147 (+)
G1351366 LOC106579206 other downstream 796180 21402227 ~ 21405117 (+)
G1351501 LOC106579196 other downstream 1073177 21679224 ~ 21680881 (+)
LOC110491629 LOC106579195 other downstream 1393310 21727617 ~ 22001169 (+)
G1353021 NA other downstream 2025832 22631879 ~ 22632305 (+)

Expression


Co-expression Network