G1350970


Basic Information

Item Value
gene id G1350970
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20647415 ~ 20650088 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1544427
GTTTTTTGAGGCCAGTTATGATTTTAGTTCTCACAGGAGCGAACTTCAAACGCATTACCAAGCTCTCATTATACTGTTAACATCATCAGAACAGAGGAAATGGTGTTCAGAGGTTCCATTAAAGGCTTATTATATGGTTGTAACAGATGTTTTGTGACTAATGTACAAGTAAACTTTAACAAAGTAGTCTTGGAGGACTTGGATGGGACAGCCCACTTAGTATGACACTCATGAGCTGACTATTCCACTGAAATGATGTCATCAGGAATGAGGCACTAAAACCTGCAGATGTTGTGTGTGACTGAGTCACTAGGTGGTAGCAACAGGATTGGTCATAACTGGCTTAACACACGAAGATCTAGCCCAAGGTGATCCTTAACACTCCTTTCTGTGCTGATTCTGAGACAAACTAAAAACGGCCTACTTTGTGTCGAATGATTCCTATTGACAATAGTGAGGCTTGACTTTCAGATTGTCCGGGGCAAGTAAATAAATGTGTCAGACAAGAAGAAGATGTTGTGTTAAAAAAAGACatgtaaaaataataatcacaagATCAACAAAAATCATTTGAATAAGAATGTGCTTTTGAGCAGATCTATCTGTGCCACATGTGCAAATGTGTTGATATTCCTTGCTGGTTAGGGAGTTATTTGCCCAGTTATATAATTGTTGGTCAGCACACAGGTACGGTCATGATAATCCTGGAAATGTAATGTTGTGCACATCAATCACCTGCATGTGTGCCAATGTGCTTGGGCccgaggagagacagagaaacattgAAGCGTTTGTAATTAACTAAGCTTAACCAAAAAAGCAGCATTTTCTAATCATCCTACAGGTTCTTGCAGGTCATTTTTATCTATCAGAAAGACCTTTATTTGCCAAATAACCGAGATGAGCTCTAtttcaaaatataacttttcCCAACCAAAAACGCTGTTCCATGCACTCCACACAGAGTACTGGAGGTAGCATAGCCGAGGCTACTAAGCAACAACTTCTAAGTAATAAAataaaactgaaaatattttactctgttcttttgaaatacattttctttgtcacttttttttcttaaaaagTTCCAATTCAGCCATGTTTATATcaacatcaaatcatttctggataacaagtaccttactgtaacagttttccattaaaatgaACAACAATATTTTTTCGCAAAAAACTTTCTCAAGCAAGATTTTTTGTTAAttaagactgtctgggagtggtctaagTGGGGAGGGAACAATGTGGGAGTGGTCTAAGTGGGGAGGGAACAATGTGGGAGTGGTCTAAGTGGGGCAGGAACTGCTATTATtagcagaggtttggaactctttgttaTTGATTTATTAACCAATTtcccacctggtgatgtcaccaggcaagcaGAAACTCCCACTCTTGCAAACAGACTGATTTGAAGGTcctgtgtatattgtattttcaaGCAGGAACTATCAGAAAATAAAACTTATCAATTTtgttcacacttttacagtgtttgTTTCATCAACTGTTGTacaatgatacaaaacacaggaaaaacacAATTTGGACTGCACCGCGCTGTATAAGACCTTCCAAAACGTACTTATAATGGATTTCTGTGTGATGACAACACTTCAATTGTGGTGCTTTGtggttttttccccctcatttttaCAGATAGCCTACagtaaaataaatgaatgaaaaTGCTACAGTgttcttaaaaaataaaataaaaaactcagTCTAATGTTAGCAaagaccttcataaacacaaccaaatgatTATTTTGGGGATAGCATatctgaaatgtatttattattggAAGTTGAGGAATAAATCTACCGTTCTTTTAAGAAACCTACTGTAGCCATTTGATTCCCGATTCATTAAATTAGTCAATTATTTATTAAAGACAAAAAGTATTCGGTTGGAATTGTAACTGTGCAATATTTTGGGGGGCTATTTAAGGGTTGCCAATCATCCTCCAGGTGCATCTAAAAGGGGCAGTGTtctattttgagacaggcttgaatatgcaAAGAAGCCCATAATGCAGAGGGTAGCCtacatttgtctgattctctataCGGTAGCAACAATGGTCATTTTTATATTGTAAAGTGGTTCCTTGAATCATACGACAATTTTAAGTATCACTCTTTGGTGACTTGAGCTTTctgaccaaaaaaaaaaacaaatctgtcctacttgtctgaaggacaagtggcaatttttttttttatgtcaaagCCCTGCAGTATTATCTGGTGAAATCTCTGCACAGGAACATAACGTGATCGTTACGATAATGAAAGAAAGTCCATTTTTACTGAATTGAGTCGCATTTGTATACAACTCAACTAGACTTGCATCCAGAGATTGAATCTCAATTCTTCAGAGTGGTCTTTTCTTAGAATACTGGAAACAAGCACATATACAGGTGTTTGTCAAGGACGATTCTGGGGAAGtcaatgtacactaccgttcaaaagtttggggtcactttga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1544427 True 2515 lncRNA 0.37 3 20647415 20650088

Neighbor

gene id symbol gene type direction distance location
znf646 LOC106579233 coding upstream 8424 20629550 ~ 20638991 (+)
LOC110491581 LOC106579237 coding upstream 24350 20597779 ~ 20623065 (+)
LOC110491578 LOC106579238 coding upstream 58376 20571757 ~ 20589039 (+)
LOC110492850 LOC106579239 coding upstream 76364 20511389 ~ 20571051 (+)
LOC110491576 LOC106579380 coding upstream 193052 20431846 ~ 20454363 (+)
phkg2 phkg2 coding downstream 14926 20665014 ~ 20679309 (+)
si:dkey-220f10.4 LOC106579379 coding downstream 31563 20681651 ~ 20688683 (+)
LOC118939613 NA coding downstream 33700 20683788 ~ 20683916 (+)
LOC110492884 LOC106579378 coding downstream 58941 20709029 ~ 20713709 (+)
gnptg gnptg coding downstream 141935 20792023 ~ 20798137 (+)
G1350939 NA non-coding upstream 41368 20579174 ~ 20606047 (+)
G1350952 NA non-coding upstream 51134 20595866 ~ 20596281 (+)
G1350891 NA non-coding upstream 174311 20472879 ~ 20473104 (+)
G1350890 NA non-coding upstream 176000 20470971 ~ 20471415 (+)
G1350870 LOC106579309 non-coding upstream 189349 20454812 ~ 20458066 (+)
G1351007 NA non-coding downstream 83434 20733522 ~ 20734122 (+)
G1350964 NA non-coding downstream 86134 20736222 ~ 20740894 (+)
G1350965 NA non-coding downstream 135550 20785638 ~ 20791850 (+)
c16h16orf91 NA non-coding downstream 167370 20817422 ~ 20819054 (+)
anks3 anks3 non-coding downstream 181557 20826541 ~ 20831718 (+)
G1350275 NA other upstream 609437 20030730 ~ 20037978 (+)
G1350066 NA other upstream 909381 19737162 ~ 19738034 (+)
LOC110491534 LOC105006846 other upstream 1505738 19138817 ~ 19141680 (+)
LOC110491516 LOC106589273 other upstream 1886995 18682058 ~ 18760420 (+)
G1348897 LOC106579309 other upstream 2091963 18555177 ~ 18555452 (+)
G1351274 NA other downstream 570677 21220765 ~ 21221147 (+)
G1351366 LOC106579206 other downstream 752139 21402227 ~ 21405117 (+)
G1351501 LOC106579196 other downstream 1029136 21679224 ~ 21680881 (+)
LOC110491629 LOC106579195 other downstream 1349269 21727617 ~ 22001169 (+)
G1353021 NA other downstream 1981791 22631879 ~ 22632305 (+)

Expression


Co-expression Network