G1351181


Basic Information

Item Value
gene id G1351181
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 21055118 ~ 21107583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1544654
gcacgaaacacagaccttatttgaagtagatcaagacattctctatggaagacatgaacggtaaaataacgaaggaacccctttcaagttcagccgcaagttattacaggaattataacgcgtcgactatttctctctaaaccatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaattcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttaatttcagtgcagcgaactctctccagaaattcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaacttttt
>TU1544655
gcacgaaacacagaccttatttgaagtagatcaagacattctctatggaagacatgaacggtaaaataacgaaggaacccctttcaagttcagccgcaagttattacaggaattataacgcgtcgactatttctctctaaaccatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaattcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttaatttcagtgcagcgaactctctccagaaattcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaagg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1544654 False 674 lncRNA 0.38 3 21055118 21107583
TU1544655 True 636 lncRNA 0.39 2 21055118 21056090

Neighbor

gene id symbol gene type direction distance location
LOC110491606 LOC106579217 coding upstream 129567 20924087 ~ 20925551 (+)
LOC118939519 NA coding upstream 167062 20885493 ~ 20888056 (+)
zgc:112496 LOC106579221 coding upstream 209427 20842992 ~ 20845691 (+)
anks3 anks3 coding upstream 223400 20826541 ~ 20831718 (+)
c16h8orf33 LOC106579225 coding upstream 228952 20823403 ~ 20826166 (+)
LOC110491616 rdh13 coding downstream 185947 21293530 ~ 21299993 (+)
decr2 decr2 coding downstream 193378 21300961 ~ 21306119 (+)
rab11fip3 rab11fip3 coding downstream 200169 21307752 ~ 21351756 (+)
ift140 ift140 coding downstream 267521 21375104 ~ 21430347 (+)
ccdc78 ccdc78 coding downstream 323583 21431166 ~ 21443552 (+)
G1351104 NA non-coding upstream 96842 20958011 ~ 20958276 (+)
G1351072 NA non-coding upstream 121233 20933468 ~ 20933885 (+)
G1351047 NA non-coding upstream 208651 20846055 ~ 20846467 (+)
c16h16orf91 NA non-coding upstream 236064 20817422 ~ 20819054 (+)
G1351232 NA non-coding downstream 47159 21154742 ~ 21154962 (+)
G1351246 NA non-coding downstream 66422 21174005 ~ 21174314 (+)
G1351269 NA non-coding downstream 98802 21206385 ~ 21206612 (+)
G1351271 NA non-coding downstream 106674 21214257 ~ 21214521 (+)
G1351275 NA non-coding downstream 115150 21222733 ~ 21223064 (+)
G1350275 NA other upstream 1017140 20030730 ~ 20037978 (+)
G1350066 NA other upstream 1317084 19737162 ~ 19738034 (+)
LOC110491534 LOC105006846 other upstream 1913441 19138817 ~ 19141680 (+)
LOC110491516 LOC106589273 other upstream 2294698 18682058 ~ 18760420 (+)
G1348897 LOC106579309 other upstream 2499666 18555177 ~ 18555452 (+)
G1351274 NA other downstream 113182 21220765 ~ 21221147 (+)
G1351366 LOC106579206 other downstream 294644 21402227 ~ 21405117 (+)
G1351501 LOC106579196 other downstream 571641 21679224 ~ 21680881 (+)
LOC110491629 LOC106579195 other downstream 891774 21727617 ~ 22001169 (+)
G1353021 NA other downstream 1524296 22631879 ~ 22632305 (+)

Expression


Co-expression Network