G1352220 (LOC106582599)


Basic Information

Item Value
gene id G1352220
gene name LOC106582599
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 21209463 ~ 21210794 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1545802
gtAATGGGCGCAGCCACCtgcccaaaaccccggataaacctccggtagtagttggcaaaccctaagaaccgctgcacctcctttaccgtggttggagtcggccaattactcacggctgcaatgcggtcatcctccatcaccaaccccgatgtggaaatgcgatatccAAGGAAGGAGACGGCCTGTTGGAAGAAcgagcatttctcagccttgacgtacaggtcatgctccaacagtctcccaagtaccctgcgcaccagagacacatgcgcggcccGTGTAGCGGAATAGACCAGAATATCATCGATGTAAACCACCACACCCTGACCGTGCAgatccctgagaatctcatccacaaaagattggaagactgctggagcattcttcaaaccgtacggcatgacgaggtactcataatggccggatgtggtactaaacgccgtcttccactcatctcccttccggatacgcaccaagttatatgcactcctgagatccagttttgtgaaaaaccgtgctccgtgaaatgactcaatcgccgtggcaatgagaggtagcgggtaactataccccaccgtgatggaatttagacctctatagtcaatgcacggacgcagaccaccctccttcttcttcacaaaaaagaaactcgaggaggcaggtgagatggagggctgaatgaacccctgccccagagattccgatatgtatgtctccatagccaccgtctcctcctgtgacaggggatacacgtgactcctgggaagtgcagcgcctaccaggagatttatcgcacaatcccctcgtcgatgaggtggtaattgggtcgccttctttttacagatgtgcacggtggagacttggtctggactctccaccgttgtagcaccgatggaaactcctacacaCCTGCCTGAGCACTCCTCCGACCACCCCtgtagagccctctgttgccacgaaatccTGGGGTTGTGACGGGCCAACCAGGGGAtccccaacaccaccggaaacgcaggagaatcaatgaggaagagactaattctctcctcatgaccctcctgcgtaaccatATCCAGTGgagccgtggcctccctgactagccctgaccctaatggtcggctatctaaggcgtGCACTGGGAAGGGTTTATCCAGCTGAACAAGGGGAATCCCTAACCTGTTCGCTAAACCGCGGTCAATAAAATTCCCcgccgcgcctgaatctactagcgccttatgccggGAAAGAGGGGAAAATTTAGGAAAAACAATCCATACATACACGTgaccaacagggggc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1545802 True 1299 TUCP 0.53 2 21209463 21210794

Neighbor

gene id symbol gene type direction distance location
si:ch211-183d21.1 LOC106579212 coding downstream 61120 21115777 ~ 21148343 (-)
nlrc3 nlrc3 coding downstream 103832 21081660 ~ 21105631 (-)
LOC110491613 LOC106579376 coding downstream 169500 21030381 ~ 21039963 (-)
wdr90 wdr90 coding downstream 182865 20968855 ~ 21026598 (-)
LOC110491609 LOC106579377 coding downstream 240722 20958937 ~ 20968741 (-)
si:ch211-183d21.3 LOC106579210 coding upstream 47647 21255836 ~ 21288348 (-)
tmem204 LOC106579206 coding upstream 193548 21404342 ~ 21414878 (-)
dlc2 dlc2 coding upstream 219606 21430400 ~ 21431098 (-)
metrn metrn coding upstream 270573 21481367 ~ 21488851 (-)
prr35 LOC106579202 coding upstream 313197 21523991 ~ 21531643 (-)
G1352197 NA non-coding downstream 32530 21176612 ~ 21176933 (-)
G1352196 NA non-coding downstream 33662 21175438 ~ 21175801 (-)
G1352195 NA non-coding downstream 34346 21174825 ~ 21175117 (-)
G1352194 NA non-coding downstream 35149 21174005 ~ 21174314 (-)
G1352148 NA non-coding downstream 129367 21078889 ~ 21080096 (-)
G1352222 NA non-coding upstream 7615 21218409 ~ 21218711 (-)
G1352223 NA non-coding upstream 9366 21220160 ~ 21220365 (-)
G1352239 NA non-coding upstream 26273 21237067 ~ 21237289 (-)
G1352242 NA non-coding upstream 29403 21240197 ~ 21240646 (-)
G1352243 NA non-coding upstream 30977 21241771 ~ 21242141 (-)
h3f3d LOC107388308 other downstream 386341 20820699 ~ 20823171 (-)
LOC110491585 NA other downstream 563265 20640226 ~ 20650176 (-)
LOC110491567 LOC106579249 other downstream 875734 20330400 ~ 20334029 (-)
LOC110491553 LOC106579383 other downstream 1511805 19691616 ~ 19697840 (-)
G1349896 NA other downstream 1747648 19461041 ~ 19461815 (-)
capn15 LOC106579196 other upstream 469635 21640601 ~ 21725046 (-)
G1352639 LOC106579195 other upstream 789157 21999951 ~ 22001156 (-)
G1353298 NA other upstream 1428237 22639031 ~ 22639812 (-)
G1353300 NA other upstream 1430620 22641414 ~ 22642102 (-)

Expression


Co-expression Network