G1351318


Basic Information

Item Value
gene id G1351318
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 21287565 ~ 21288350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1544814
cgacctgtctgtctcctccatgGTCCTGCATTTGCGCAGCGCGAGGAGCCCCTGCGCTCTTCAACTGACCGGTTGATTCACCGGGGTTTGGTGGCAATAAACCGACGAGATCTCCTGTTTTTTAAACTATTCTATTTGAAATGAAATGAATCATATTTCAACATCAACGAATGAGTCCATATATGAAAGTTGTATTTTTAAACTGCAGTTGTGTTTTTGTTTCAACTATGCAGGGTTCTCTTGTCTGAAAAATGAATAGCCTATAGTGTGAACTGACTTCAGGTCCGTCTTTGTGTCTTGTTTTCTCCTCTGTGTTGGTAGTAATTCTCTGTTTGGTTCCGTGCGTAAAGGCGCTCTTCTATTTAGGGTTATTCGGTGCCAATGGAGAGTTGACTCCGTTATCTTCTATGGTTTGGCGAATTTCGGTAAGATTGCCCGTTTGCCTCTCGAAAGCGCACATCCACCGTCAACCTGCGAGGCAACTAGAGGCGGGTGTGTGTTTATCTTTCGCTCTTCTTGGGGTCTGCATGACCCAATTCAACACCACACCAAATCCATTCATTTGCAGCATACTTTTCAGCCTGCGTGGAAAATGACCCGACTCTCTATCTGCACCTATTCACCGTTTCTCCATTTGTCCTCTTTGAATCAGAGTGCTATTGTTGCTTTTCGCTCTCCTTTTCATAGCTGTTCCAATCTCTCTGCTGCTTAGCACTACCAGCCA
>TU1544820
cgacctgtctgtctcctccatgGTCCTGCATTTGCGCAGCGCGAGGAGCCCCTGCGCTCTTCAACTGACCGGTTGATTCACCGGGGTTTGGTGGCAATAAACCGACGAGATCTCCTGTTTTTTAAACTATTCTATTTGAAATGAAATGAATCATATTTCAACATCAACGAATGAGTCCATATATGAAAGTTGTATTTTTAAACTGCAGTTGTGTTTTTGTTTCAACTATGCAGGGTTCTCTTGTCTGAAAAATGAATAGCCTATAGTGTGAACTGACTTCAGGTCCGTCTTTGTGTCTTGTTTTCTCCTCTGTGTTGGTAGTAATTCTCTGTTTGGTTCCGTGCGTAAAGGCGCTCTTCTATTTAGGGTTATTCGGTGCCAATGGAGAGTTGACTCCGTTATCTTCTATGGTTTGGCGAATTTCGGTAAGATTGCCCGTTTGCCTCTCGAAAGCGCACATCCACCGTCAACCTGCGAGGCAACTAGAGGCGGGTGTGTGTTTATCTTTCGCTCTTCTTGGGGTCTGCATGACCCAATTCAACACCACACCAAATCCATTCATTTGCAGCATACTTTTCAGCCTGCGTGGAAAATGACCCGACTCTCTATCTGCACCTATTCACCGTTTCTCCATTTGTCCTCTTTGAATCAGAGTGCTATTGTTGCTTTTCGCTCTCCTTTTCATAGCTGTTCCAATCTCTCTGCTGCTTAGCACTACCAGCCAGCTCTTTCATTGTTCCCTCCCGTCTCGTCGTCTCCACCACTCCACCTTCTGGCAGCAGAAGC
>TU1544816
GGAGCCCCTGCGCTCTTCAACTGACCGGTTGATTCACCGGGGTTTGGTGGCAATAAACCGACGAGATCTCCTGTTTTTTAAACTATTCTATTTGAAATGAAATGAATCATATTTCAACATCAACGAATGAGTCCATATATGAAAGTTGTATTTTTAAACTGCAGTTGTGTTTTTGTTTCAACTATGCAGGGTTCTCTTGTCTGAAAAATGAATAGCCTATAGTGTGAACTGACTTCAGGTCCGTCTTTGTGTCTTGTTTTCTCCTCTGTGTTGGTAGTAATTCTCTGTTTGGTTCCGTGCGTAAAGGCGCTCTTCTATTTAGGGTTATTCGGTGCCAATGGAGAGTTGACTCCGTTATCTTCTATGGTTTGGCGAATTTCGGTAAGATTGCCCGTTTGCCTCTCGAAAGCGCACATCCACCGTCAACCTGCGAGGCAACTAGAGGCGGGTGTGTGTTTATCTTTCGCTCTTCTTGGGGTCTGCATGACCCAATTCAACACCACACCAAATCCATTCATTTGCAGCATACTTTTCAGCCTGCGTGGAAAATGACCCGACTCTCTATCTGCACCTATTCACCGTTTCTCCATTTGTCCTCTTTGAATCAGAGTGCTATTGTTGCTTTTCGCTCTCCTTTTCATAGCTGTTCCAATCTCTCTGCTGCTTAGCACTACCAGCCA
>TU1544817
GGAGCCCCTGCGCTCTTCAACTGACCGGTTGATTCACCGGGGTTTGGTGGCAATAAACCGACGAGATCTCCTGTTTTTTAAACTATTCTATTTGAAATGAAATGAATCATATTTCAACATCAACGAATGAGTCCATATATGAAAGTTGTATTTTTAAACTGCAGTTGTGTTTTTGTTTCAACTATGCAGGGTTCTCTTGTCTGAAAAATGAATAGCCTATAGTGTGAACTGACTTCAGGTCCGTCTTTGTGTCTTGTTTTCTCCTCTGTGTTGGTAGTAATTCTCTGTTTGGTTCCGTGCGTAAAGGCGCTCTTCTATTTAGGGTTATTCGGTGCCAATGGAGAGTTGACTCCGTTATCTTCTATGGTTTGGCGAATTTCGGTAAGATTGCCCGTTTGCCTCTCGAAAGCGCACATCCACCGTCAACCTGCGAGGCAACTAGAGGCGGGTGTGTGTTTATCTTTCGCTCTTCTTGGGGTCTGCATGACCCAATTCAACACCACACCAAATCCATTCATTTGCAGCATACTTTTCAGCCTGCGTGGAAAATGACCCGACTCTCTATCTGCACCTATTCACCGTTTCTCCATTTGTCCTCTTTGAATCAGAGTGCTATTGTTGCTTTTCGCTCTCCTTTTCATAGCTGTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1544814 False 724 lncRNA 0.45 1 21287565 21288288
TU1544820 False 786 lncRNA 0.46 1 21287565 21288350
TU1544816 False 680 lncRNA 0.44 1 21287609 21288288
TU1544817 True 650 lncRNA 0.44 1 21287609 21288258

Neighbor

gene id symbol gene type direction distance location
cluap1 cluap1 coding upstream 207458 21050726 ~ 21080107 (+)
LOC110491606 LOC106579217 coding upstream 362014 20924087 ~ 20925551 (+)
LOC118939519 NA coding upstream 399509 20885493 ~ 20888056 (+)
zgc:112496 LOC106579221 coding upstream 441874 20842992 ~ 20845691 (+)
anks3 anks3 coding upstream 455847 20826541 ~ 20831718 (+)
LOC110491616 rdh13 coding downstream 5180 21293530 ~ 21299993 (+)
decr2 decr2 coding downstream 12611 21300961 ~ 21306119 (+)
rab11fip3 rab11fip3 coding downstream 19402 21307752 ~ 21351756 (+)
ift140 ift140 coding downstream 86754 21375104 ~ 21430347 (+)
ccdc78 ccdc78 coding downstream 142816 21431166 ~ 21443552 (+)
G1351316 NA non-coding upstream 3777 21283556 ~ 21283788 (+)
G1351309 NA non-coding upstream 13192 21268234 ~ 21274373 (+)
G1351306 NA non-coding upstream 23845 21263399 ~ 21263720 (+)
G1351294 NA non-coding upstream 36388 21248451 ~ 21251177 (+)
G1351290 NA non-coding upstream 43725 21243572 ~ 21243840 (+)
G1351401 NA non-coding downstream 277918 21566268 ~ 21566447 (+)
G1351443 NA non-coding downstream 286664 21575014 ~ 21575231 (+)
G1351451 NA non-coding downstream 295650 21584000 ~ 21584319 (+)
G1351460 NA non-coding downstream 308292 21596642 ~ 21597102 (+)
G1351461 NA non-coding downstream 309561 21597911 ~ 21598110 (+)
G1351274 NA other upstream 66418 21220765 ~ 21221147 (+)
G1350275 NA other upstream 1249587 20030730 ~ 20037978 (+)
G1350066 NA other upstream 1549531 19737162 ~ 19738034 (+)
LOC110491534 LOC105006846 other upstream 2145888 19138817 ~ 19141680 (+)
LOC110491516 LOC106589273 other upstream 2527145 18682058 ~ 18760420 (+)
G1351366 LOC106579206 other downstream 113877 21402227 ~ 21405117 (+)
G1351501 LOC106579196 other downstream 390874 21679224 ~ 21680881 (+)
LOC110491629 LOC106579195 other downstream 711007 21727617 ~ 22001169 (+)
G1353021 NA other downstream 1343529 22631879 ~ 22632305 (+)
G1353519 NA other downstream 1756919 23045269 ~ 23045884 (+)

Expression


Co-expression Network