Gene
RNA
| Item | Value |
|---|---|
| gene id | G1352328 |
| gene name | ift140 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 21388959 ~ 21389531 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ift140 | Predicted to be involved in intraciliary retrograde transport. Predicted to be part of intraciliary transport particle A. Predicted to be active in axoneme and ciliary basal body. Human ortholog(s) of this gene implicated in retinitis pigmentosa and short-rib thoracic dysplasia 9 with or without polydactyly. Orthologous to human IFT140 (intraflagellar transport 140). |
| description |
|---|
| intraflagellar transport protein 140 homolog |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1545922 | True | 315 | lncRNA | 0.54 | 2 | 21388959 | 21389531 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:ch211-183d21.3 | LOC106579210 | coding | downstream | 100611 | 21255836 ~ 21288348 (-) |
| si:ch211-183d21.1 | LOC106579212 | coding | downstream | 240616 | 21115777 ~ 21148343 (-) |
| nlrc3 | nlrc3 | coding | downstream | 283328 | 21081660 ~ 21105631 (-) |
| LOC110491613 | LOC106579376 | coding | downstream | 348996 | 21030381 ~ 21039963 (-) |
| wdr90 | wdr90 | coding | downstream | 362361 | 20968855 ~ 21026598 (-) |
| tmem204 | LOC106579206 | coding | upstream | 14811 | 21404342 ~ 21414878 (-) |
| dlc2 | dlc2 | coding | upstream | 40869 | 21430400 ~ 21431098 (-) |
| metrn | metrn | coding | upstream | 91836 | 21481367 ~ 21488851 (-) |
| prr35 | LOC106579202 | coding | upstream | 134460 | 21523991 ~ 21531643 (-) |
| crp1 | LOC106579201 | coding | upstream | 173984 | 21563515 ~ 21566354 (-) |
| G1352264 | NA | non-coding | downstream | 100351 | 21288394 ~ 21288608 (-) |
| G1352253 | NA | non-coding | downstream | 123661 | 21265078 ~ 21265298 (-) |
| G1352234 | LOC106584099 | non-coding | downstream | 133274 | 21252460 ~ 21255685 (-) |
| G1352233 | NA | non-coding | downstream | 138086 | 21248551 ~ 21250873 (-) |
| G1352352 | ift140 | non-coding | upstream | 34784 | 21424315 ~ 21425334 (-) |
| G1352366 | NA | non-coding | upstream | 57609 | 21447140 ~ 21447409 (-) |
| G1352373 | NA | non-coding | upstream | 67118 | 21456649 ~ 21457002 (-) |
| G1352378 | NA | non-coding | upstream | 81207 | 21470738 ~ 21471004 (-) |
| G1352220 | LOC106582599 | other | downstream | 178165 | 21209463 ~ 21210794 (-) |
| h3f3d | LOC107388308 | other | downstream | 565837 | 20820699 ~ 20823171 (-) |
| LOC110491585 | NA | other | downstream | 742761 | 20640226 ~ 20650176 (-) |
| LOC110491567 | LOC106579249 | other | downstream | 1055230 | 20330400 ~ 20334029 (-) |
| capn15 | LOC106579196 | other | upstream | 290898 | 21640601 ~ 21725046 (-) |
| G1352639 | LOC106579195 | other | upstream | 610420 | 21999951 ~ 22001156 (-) |
| G1353298 | NA | other | upstream | 1249500 | 22639031 ~ 22639812 (-) |
| G1353300 | NA | other | upstream | 1251883 | 22641414 ~ 22642102 (-) |
| G1353762 | NA | other | upstream | 1653718 | 23043249 ~ 23044761 (-) |
