G1351366 (LOC106579206)


Basic Information

Item Value
gene id G1351366
gene name LOC106579206
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 21402227 ~ 21405117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1544874
ctcattttgacttgttttaagcacattacatcaaagttggatcagcctgtagtgtggttttccactttaatttttaGTGTGActtcaaatccagacctccatgggttgataaatttgatttccattgataatttttgtgggattttgttgtcagcactttcaactatgtgaagaaaaaagtatttaataagaatatttcattcattcagatctaggatgtgttattttagtgttccctttatttttttgagcagtatgtatatgtgtgtgtatatatatatatatatatatatataatcatttTTATTTGTGGTAACACAATTTttatatatactgttttctatactgtatataagagtCTTAGACATCACACACAATAGAACAGTATTTTAAAAGACAATACCACACATTATTGTAACATTTgtattatttgttattattttcaTGCACACTCACTGTTTGGCTTGAAAGTGACAACTCCACGAACAGCTGATTTCCTTTCAGCAGTATGATATAATAGCAATATAATAGCAATATTTTAAtacacctgtataacattaaTTTAAGTACATGTACCAGAAGCGAGCAGATTATTGAATGTTTATGGTGTTTACTTTATGTCTGTTGGGCAAATCTGAAATCATCAATGTCCTGAGGTCTGAAGATCTGAAAATAGTCTTCTTTTAATACAATTTGCCCATTAAACACCCTTTGGTGGTTTGGATAGAATGAATGAATGTGCAATTTTGTGCATACGTACACTGCACTTGACAACATTGAGTTCTCAAGATAAAGGTAGACCTAAATCTCTTTTTAATATTAAGAATAATATAAACAATATGCAGGAAGTATATGTTATTACATACTGTAAGTGCACTAAGAACAAAACATGTCAAGATCCAGCTTGATCTTTTCCTAAACAGGGTGTTTTCATGGAGTTTTGCTGAGGAAATTCCAGGTCAAACAAGCCTTCAAGCACACTTTGGAGTAATTGGCTTACTACAACATGCCTACTAAAACGACAAAttcactacagctcagtgtttcccctaggagtTTTTTCAGCAGTGGTGGTAGAGTTAGCTGTTTTTAGGATGTTTTAAATGTTTAATATAATTGAGTGGTGAATATAAGTGGTGGCCATGGTTTAGCAGCGGCGGTGCACTGCATATAGGAGAAACACTGCAGTTTATGGTTTTAAAACTGActtacatacactatatacaaaagtatgtggacaccccttcaaattagtggatttggttatttcagccacacccattgctgacaattttataaaatcaagcacacaatcatgcaatagacagacattggcagtagaatggccttgctgaagagctcagtgactttcaacgtggcaccggcataggatgccacatttccaacaagttagttcgtCAAATGtttgtcctgctagagctgcctcagTCAACTGTAAattctgttattgtgaagtggaaacatctaggagcaacaatggctcagctgtgaagtagtaggctacacatgctcacagaacgggacccccGAGTGCTGAAGGACATAGTGAGTAAAaactgtctgtcctcagttgcaacactcactaccgagttccaaactgcctctggaagccacGTCAGCACGATAACTGTTTTtctcgggagcttcatgaaatgggtatcccatggccgagcagccacacacaagcctaatatcaacatgctcaatgccaagcgtcggctggagtggtgtaaagctcgccgccattggactgcagggaataatgatctggggctgtttttcatggttcgggctaggccccttagttccagtgaagggaaatgttaacactacagcatacaatgacattctagacaattttatgcttccaattctctgcttccaactttattcaacagtttggggaaggccctttcctgtttcagcatgtcattgcccccgtgcacaaagcaaggtccatacagtaatggtttgtcgagatcgttgtggaagaacttgactggcctgcacagagccctgacctcaaccccatcgaacacatttgggatgatttggaatgccaattgcgagccaggcctaattgccaggccaacatcagtgcccaacctcactaatgctcttgtggctgaatggaagcaagtccccgcagcaatgttccaacatctagtggaaagccttcccagaagagtggagcctGTAATAGCAGCAAAAGAGGGatcaactcaatattaatgcccatgatttttgaatgagatgttcaacgagcaggtgtccacatacttttggccatgttgtgtatcattcatattttttttgtgttagcTGGATGTTTTATGGAGACACGATCCTTGCATCAAGGAGTGTTACTCAGTCCAGGGAAAAATTTGAGTTCCACTGGTCATTGTAAATGATGAAGCCATGAAGTTCGGAGATGTAGAACTATACAACAGTGAAATCATGTTAGTCCAGCACTGGTAGAGCCACAACAAAACATGTGTCTTCTGTAGAGTAAATAATTGAGGCACCTGTTTGGGTGAAAATATGCAGAGACTGTCAGAGCATTGTCTATTCTTCACCCTGTTAGGTTCAAGAGTCAGGGCTCGGGGGGCTCAGCAGGGTGACTCCACATAGTCATTGTCGAGGCGTGGGTGGAAGTTCGACGCCAGCGAGCGGCTGATGACAATGACCCGGGGTGTGAGGCAGTCGTCGCGGCGATGCAGGATGTTCCAGATGAGCATGGCAGCCGCGAGCGTGGCCAATAAGCAGGCGGCGATGTCCACGTAGCACGAGTAGGACAGGTGTGTGTACGGGCCAATCCGGTAGAACGTCACCAAGCCGATCACCAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1544874 True 2867 TUCP 0.41 2 21402227 21405117

Neighbor

gene id symbol gene type direction distance location
rab11fip3 rab11fip3 coding upstream 50471 21307752 ~ 21351756 (+)
decr2 decr2 coding upstream 96108 21300961 ~ 21306119 (+)
LOC110491616 rdh13 coding upstream 102234 21293530 ~ 21299993 (+)
cluap1 cluap1 coding upstream 322120 21050726 ~ 21080107 (+)
LOC110491606 LOC106579217 coding upstream 476676 20924087 ~ 20925551 (+)
ccdc78 ccdc78 coding downstream 26049 21431166 ~ 21443552 (+)
LOC110492885 LOC106579374 coding downstream 202780 21607897 ~ 21608814 (+)
LOC110492851 LOC106579353 coding downstream 204676 21609793 ~ 21610638 (+)
LOC110491629 LOC106579195 coding downstream 322500 21727617 ~ 22001169 (+)
nog2 LOC106579194 coding downstream 629506 22034623 ~ 22037243 (+)
G1351318 NA non-coding upstream 113877 21287565 ~ 21288350 (+)
G1351316 NA non-coding upstream 118439 21283556 ~ 21283788 (+)
G1351309 NA non-coding upstream 127854 21268234 ~ 21274373 (+)
G1351306 NA non-coding upstream 138507 21263399 ~ 21263720 (+)
G1351294 NA non-coding upstream 151050 21248451 ~ 21251177 (+)
G1351401 NA non-coding downstream 161151 21566268 ~ 21566447 (+)
G1351443 NA non-coding downstream 169897 21575014 ~ 21575231 (+)
G1351451 NA non-coding downstream 178883 21584000 ~ 21584319 (+)
G1351460 NA non-coding downstream 191525 21596642 ~ 21597102 (+)
G1351461 NA non-coding downstream 192794 21597911 ~ 21598110 (+)
G1351274 NA other upstream 181080 21220765 ~ 21221147 (+)
G1350275 NA other upstream 1364249 20030730 ~ 20037978 (+)
G1350066 NA other upstream 1664193 19737162 ~ 19738034 (+)
LOC110491534 LOC105006846 other upstream 2260550 19138817 ~ 19141680 (+)
LOC110491516 LOC106589273 other upstream 2641807 18682058 ~ 18760420 (+)
G1351501 LOC106579196 other downstream 274107 21679224 ~ 21680881 (+)
G1353021 NA other downstream 1226762 22631879 ~ 22632305 (+)
G1353519 NA other downstream 1640152 23045269 ~ 23045884 (+)
LOC110491658 LOC106579351 other downstream 1718742 23123859 ~ 23134383 (+)

Expression


Co-expression Network