Gene
RNA
| Item | Value |
|---|---|
| gene id | G1351455 |
| gene name | LOC106579197 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 21626313 ~ 21628686 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| putative protein MSS51 homolog, mitochondrial isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1544971 | True | 651 | lncRNA | 0.54 | 2 | 21626313 | 21628686 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110492851 | LOC106579353 | coding | upstream | 15675 | 21609793 ~ 21610638 (+) |
| LOC110492885 | LOC106579374 | coding | upstream | 17499 | 21607897 ~ 21608814 (+) |
| ccdc78 | ccdc78 | coding | upstream | 182761 | 21431166 ~ 21443552 (+) |
| ift140 | ift140 | coding | upstream | 195966 | 21375104 ~ 21430347 (+) |
| rab11fip3 | rab11fip3 | coding | upstream | 274557 | 21307752 ~ 21351756 (+) |
| LOC110491629 | LOC106579195 | coding | downstream | 98931 | 21727617 ~ 22001169 (+) |
| nog2 | LOC106579194 | coding | downstream | 405937 | 22034623 ~ 22037243 (+) |
| ntn2 | LOC106579193 | coding | downstream | 452422 | 22081108 ~ 22144284 (+) |
| atp6v0cb | vatl | coding | downstream | 688683 | 22317369 ~ 22329149 (+) |
| spsb3b | LOC106579188 | coding | downstream | 713628 | 22342314 ~ 22353831 (+) |
| G1351470 | LOC106579199 | non-coding | upstream | 3274 | 21617501 ~ 21623039 (+) |
| G1351461 | NA | non-coding | upstream | 28203 | 21597911 ~ 21598110 (+) |
| G1351460 | NA | non-coding | upstream | 29211 | 21596642 ~ 21597102 (+) |
| G1351451 | NA | non-coding | upstream | 41994 | 21584000 ~ 21584319 (+) |
| G1351443 | NA | non-coding | upstream | 51082 | 21575014 ~ 21575231 (+) |
| G1351474 | LOC106579198 | non-coding | downstream | 5964 | 21634650 ~ 21721894 (+) |
| G1351482 | NA | non-coding | downstream | 20450 | 21649136 ~ 21650020 (+) |
| G1351557 | NA | non-coding | downstream | 116320 | 21745006 ~ 21745262 (+) |
| G1351560 | NA | non-coding | downstream | 119708 | 21748394 ~ 21748618 (+) |
| G1351595 | NA | non-coding | downstream | 154464 | 21783150 ~ 21787419 (+) |
| G1351366 | LOC106579206 | other | upstream | 221196 | 21402227 ~ 21405117 (+) |
| G1351274 | NA | other | upstream | 405166 | 21220765 ~ 21221147 (+) |
| G1350275 | NA | other | upstream | 1588335 | 20030730 ~ 20037978 (+) |
| G1350066 | NA | other | upstream | 1888279 | 19737162 ~ 19738034 (+) |
| LOC110491534 | LOC105006846 | other | upstream | 2484636 | 19138817 ~ 19141680 (+) |
| G1351501 | LOC106579196 | other | downstream | 50538 | 21679224 ~ 21680881 (+) |
| G1353021 | NA | other | downstream | 1003193 | 22631879 ~ 22632305 (+) |
| G1353519 | NA | other | downstream | 1416583 | 23045269 ~ 23045884 (+) |
| LOC110491658 | LOC106579351 | other | downstream | 1495173 | 23123859 ~ 23134383 (+) |
