G1352688


Basic Information

Item Value
gene id G1352688
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 22046906 ~ 22047429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1546314
gttccggactgtggaccgtcgcaggaggttccgaaCTGTGGACCGTcaccagaagctctggactggggaccgtcgccggaagctctggactgtgaaccatcgccggaagctctggactgtgaatgtgcactggaggcctagtgcgttgagccggcacaggtggtaccggactggtgacacacgcttcagggcaagtgcgaggaggaggcacaggacgtacaggactgagg

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1546314 True 230 lncRNA 0.62 2 22046906 22047429

Neighbor

gene id symbol gene type direction distance location
nog2 LOC106579194 coding upstream 9663 22034623 ~ 22037243 (+)
LOC110491629 LOC106579195 coding upstream 45737 21727617 ~ 22001169 (+)
LOC110492851 LOC106579353 coding upstream 436268 21609793 ~ 21610638 (+)
LOC110492885 LOC106579374 coding upstream 438092 21607897 ~ 21608814 (+)
ccdc78 ccdc78 coding upstream 603354 21431166 ~ 21443552 (+)
ntn2 LOC106579193 coding downstream 33679 22081108 ~ 22144284 (+)
atp6v0cb vatl coding downstream 269940 22317369 ~ 22329149 (+)
spsb3b LOC106579188 coding downstream 294885 22342314 ~ 22353831 (+)
mfsd1l mfsd1 coding downstream 310155 22357584 ~ 22366265 (+)
si:ch73-103b11.2 LOC106579185 coding downstream 321458 22368887 ~ 22475310 (+)
G1352680 NA non-coding upstream 8757 22037709 ~ 22038149 (+)
G1352676 NA non-coding upstream 13974 22032717 ~ 22032932 (+)
G1352659 NA non-coding upstream 28533 22018042 ~ 22018373 (+)
G1351595 NA non-coding upstream 259487 21783150 ~ 21787419 (+)
G1352691 NA non-coding downstream 1977 22049406 ~ 22049686 (+)
G1352713 NA non-coding downstream 25053 22072482 ~ 22072798 (+)
G1352795 NA non-coding downstream 105171 22152600 ~ 22152827 (+)
G1352801 NA non-coding downstream 116560 22163989 ~ 22164338 (+)
G1351501 LOC106579196 other upstream 366025 21679224 ~ 21680881 (+)
G1351366 LOC106579206 other upstream 641789 21402227 ~ 21405117 (+)
G1351274 NA other upstream 825759 21220765 ~ 21221147 (+)
G1350275 NA other upstream 2008928 20030730 ~ 20037978 (+)
G1353021 NA other downstream 584450 22631879 ~ 22632305 (+)
G1353519 NA other downstream 997840 23045269 ~ 23045884 (+)
LOC110491658 LOC106579351 other downstream 1076430 23123859 ~ 23134383 (+)
G1353660 NA other downstream 1251028 23298457 ~ 23298753 (+)
LOC110491671 LOC106579157 other downstream 1432660 23430867 ~ 23488782 (+)

Expression


Co-expression Network