XLOC_003269 (CR556712.1)


Basic Information

Item Value
gene id XLOC_003269
gene name CR556712.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11588078 ~ 11590676 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006447
ctcaaaacaaaaacatttgtgacTCTGCACTATTCAGAAATGATGGCCAAATTCATTGTACTGACCATTGTAGCAATGCTGGTGGCAGCGTGTGCGGCTTCTCCTCTGTCTAAAGTCAAACCTGTGAACACAAAGAGGTCAGCAATTTCCCCAGAGAGCTCACCCGAGGCTCATGAGACCCCGCTGGCTCGAGTAAGGCGTTCAGTGGGGTTATCGGAGGATCAGCGCGAGCTCATGTCCCGTCAGCTCCTGCAGGCACTATCAGAAATCATCCAACGAGAGGACTGCCTCTCAGATTATCAAGGCTGGGTAGATTTTGGGCGCCGGAGTTCAAACTGATATTCACTAAACTATGTAAAAACACTGTACTGTGATACTCTGTACtttaacattaaatatatttgcaAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117418

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006447 True 408 lncRNA 0.47 3 11588078 11590676

Neighbor

gene id symbol gene type direction distance location
XLOC_003268 NA coding upstream 74093 11504014 ~ 11513985 (+)
XLOC_003263 si:dkey-23f9.11 coding upstream 155599 11430552 ~ 11432479 (+)
XLOC_003261 si:dkey-23f9.13 coding upstream 166972 11419186 ~ 11421106 (+)
XLOC_003259 si:dkey-23f9.12 coding upstream 178334 11407892 ~ 11409744 (+)
XLOC_003258 si:dkey-23f9.9 coding upstream 198616 11387509 ~ 11389462 (+)
XLOC_003270 jupa coding downstream 128899 11719575 ~ 11781911 (+)
XLOC_003271 CR848705.1 coding downstream 201732 11792408 ~ 11796299 (+)
XLOC_003272 pimr93 coding downstream 206350 11797026 ~ 11804720 (+)
XLOC_003273 NA coding downstream 218547 11809223 ~ 11823154 (+)
XLOC_003274 NA coding downstream 229688 11820364 ~ 11854446 (+)
XLOC_003267 BX324177.19 misc upstream 125476 11462306 ~ 11462602 (+)
XLOC_003266 BX324177.20 misc upstream 126976 11460806 ~ 11461102 (+)
XLOC_003265 BX324177.12 misc upstream 137636 11450155 ~ 11450442 (+)
XLOC_003264 BX324177.22 misc upstream 146322 11441460 ~ 11441756 (+)
XLOC_003262 BX324177.15 misc upstream 158389 11429393 ~ 11429689 (+)
XLOC_003281 BX469912.12 misc downstream 572076 12162752 ~ 12163048 (+)
XLOC_003283 BX469912.14 misc downstream 580619 12171295 ~ 12171591 (+)
XLOC_003285 BX469912.9 misc downstream 596630 12187306 ~ 12187602 (+)
XLOC_003286 BX469912.6 misc downstream 599049 12189725 ~ 12190024 (+)
XLOC_003287 BX469912.15 misc downstream 618233 12208909 ~ 12209205 (+)
XLOC_003252 BX324177.5 non-coding upstream 207191 11353459 ~ 11380887 (+)
XLOC_003253 NA non-coding upstream 228363 11359421 ~ 11359715 (+)
XLOC_003241 NA non-coding upstream 915070 10669135 ~ 10673008 (+)
XLOC_003239 CT990625.1 non-coding upstream 1050675 10535456 ~ 10537403 (+)
XLOC_003275 NA non-coding downstream 242668 11833344 ~ 11871147 (+)
XLOC_003276 NA non-coding downstream 249151 11839827 ~ 11876130 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000305_00271267_00274179 NA coding CI01000305 null 269611 ~ 274618 (+)
tiger barb (Puntius tetrazona) LOC122354564 NA misc NC_056709.1 CM032078.1 15400918 ~ 15401691 (-)