G1353531


Basic Information

Item Value
gene id G1353531
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23081616 ~ 23082242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1547312
GCGCAGTCCAGCTCGGCTCAGCTTGGCTCGGCTCAGTAGTCCGAAAAGGATATCACTGACCTCAGGCCGTCCTCTCTCAGGTTGTCAATAGCGAGGGGTTTGCGCCTCTCCGCCAGTGTCTTCTTCTTGATCTCCCTCCCTGTttgtctcttccctctcctctgctctgcctgGGGGGGCATCATCACCCAGAACTCGATCAGTGAATAAAATAGCACTACGAGGGTTAATTAAGTTAACACGTATTTCACACACATTTTCCctcttacacatacacacacacacacacaaactaaagcACCTGCAGTATACTGTAAACGCTTACAACCAACAAAGTGTAAGCATTGGTAAAGATTATGCTTAACAGCTATTCCACTTTGTCTCTGCAATATCATTAGCATTCTGACCTTTGCCAAGAAACCCCCAAAGTGAGCCCCCATGTTAGAGAGCACTTTCTTCTTCTTGGCTTCGTCATCCGCCCTTTTCTTGGCTTCCTCGTCCTCTTTCCTCTGCCGCTCTTCCTGAGTAACAAAAGTCTAATCTGTTTACACTAGTTTTATCATATCGACATGTATTCAATTGATTTCTGTGACTAATTGTTTTTGACTGCCAATGCACATTTACAAC

Function

NR:

description
troponin T, slow skeletal muscle-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1547312 True 627 lncRNA 0.45 1 23081616 23082242

Neighbor

gene id symbol gene type direction distance location
LOC110491656 dnaaf3 coding upstream 3130 23070791 ~ 23078486 (+)
syt5b LOC106579173 coding upstream 11617 23053857 ~ 23069999 (+)
zgc:56095 fri3 coding upstream 38461 23013832 ~ 23043155 (+)
si:dkey-197c15.6 LOC105030686 coding upstream 94447 22984913 ~ 22987169 (+)
fgf21 LOC106579352 coding upstream 198981 22877257 ~ 22882635 (+)
LOC118939472 NA coding downstream 31152 23113394 ~ 23121852 (+)
LOC110491658 LOC106579351 coding downstream 42048 23123859 ~ 23134383 (+)
LOC110491660 LOC106579168 coding downstream 125884 23208126 ~ 23213840 (+)
LOC110491663 LOC106579167 coding downstream 135171 23217413 ~ 23235290 (+)
LOC110491666 LOC106579166 coding downstream 166417 23248659 ~ 23264309 (+)
G1353522 NA non-coding upstream 28571 23052819 ~ 23053045 (+)
G1353521 NA non-coding upstream 30861 23050530 ~ 23050755 (+)
G1353506 NA non-coding upstream 74000 23003418 ~ 23007616 (+)
G1353399 NA non-coding upstream 176051 22899091 ~ 22905565 (+)
G1353451 NA non-coding upstream 188104 22893225 ~ 22893512 (+)
G1353534 NA non-coding downstream 2737 23084979 ~ 23085305 (+)
G1353537 NA non-coding downstream 6671 23088913 ~ 23089136 (+)
G1353541 NA non-coding downstream 11484 23093726 ~ 23093995 (+)
G1353548 NA non-coding downstream 23230 23105472 ~ 23105817 (+)
G1353551 NA non-coding downstream 29664 23111906 ~ 23112268 (+)
G1353519 NA other upstream 35732 23045269 ~ 23045884 (+)
G1353021 NA other upstream 449311 22631879 ~ 22632305 (+)
LOC110491629 LOC106579195 other upstream 1081365 21727617 ~ 22001169 (+)
G1351501 LOC106579196 other upstream 1400735 21679224 ~ 21680881 (+)
G1351366 LOC106579206 other upstream 1676499 21402227 ~ 21405117 (+)
G1353660 NA other downstream 216215 23298457 ~ 23298753 (+)
LOC110491671 LOC106579157 other downstream 397847 23430867 ~ 23488782 (+)
G1354668 NA other downstream 911376 23993618 ~ 23995021 (+)
G1354681 rpl19 other downstream 1003466 24085708 ~ 24090034 (+)

Expression


Co-expression Network