G1354034 (LOC106579162)


Basic Information

Item Value
gene id G1354034
gene name LOC106579162
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23324517 ~ 23325450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1547865
GGTTTTCCTTCCTTGTCCAACCAGCACTGTTGAAGCCCCAGATGGGGTTTGATTTGTGACGGTTGGCCAGGGAAGTCCTTATCCTCTTGCAGCCCTTGGCGTCAGGAGTGACTGATCGGCTGCGTTTCTTTGCGTTCGCTGCAGTGATCCAGAGGCGAGGAAGGGAGCGAGACCGACCTGGGACAGTCTGAGGGACTGGTTCCACCTCTGCGGATGCTGACATATGGCTGTCAATCTCCATATCTTCCCCCTCTGTGGGATGGTGAGGAGTGGTGGGCTGAAGCAGGACCTGGGGGCTGAGGACTGGGGGCTGAGAGTAGGGGCTGTCGGGTTGGGACATGGGCTCAAAGGGAAACATGGTTTTAGGGCTGAGTACAGGAGGCTGGGAGTAGGGGCTGGGGGGCTGGCATTGGGTGTtggggcagggggagaggggcTGGGAGTGGTTTGGTAGGGGGGCTAGGGTGGGGGACTGACAAAGAGTGtcaggggagggagggtggttgtcaggacaggaggagagaggctgggggaggGATGGCAGGAGGAGTAGGCTGAGGGTGTCAGGGCAGGGGGGGAGAGGCTGGGCATGGGATGACAGGGGGACTACGCTCGGTGTGGAAGGGCTTGGATCCGGGTCCAGGGTGTTGGACGGTGAGCCTTGGGTAAGCAGGGCCTGGATGGCGTGCTCCGTCTCACTGTGCGTCTGCATCTCAGAGGGGCTGTGGGGCAGTTGTAGTAGAAGTGGAGGAGTCTCCAACCTGATAGGGTAGCAGAAAGCACAAAACCACTTTTAGAAGATAATTTTTTTAAAGAGAACATTTCTGAGAAATAACCATGGTACATGTGAATGGTATGGCACAATGTTAAGTGATTTTAATCCAACCTCCAATTATAATTTGGATTGCATTATAGTATCAGGGTACTTCTAAAC

Function

NR:

description
uncharacterized protein LOC110491667

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1547865 True 934 lncRNA 0.56 1 23324517 23325450

Neighbor

gene id symbol gene type direction distance location
LOC110491666 LOC106579166 coding upstream 60208 23248659 ~ 23264309 (+)
LOC110491663 LOC106579167 coding upstream 89227 23217413 ~ 23235290 (+)
LOC110491660 LOC106579168 coding upstream 110677 23208126 ~ 23213840 (+)
LOC110491658 LOC106579351 coding upstream 198061 23123859 ~ 23134383 (+)
LOC118939472 NA coding upstream 202665 23113394 ~ 23121852 (+)
LOC110491669 LOC106579159 coding downstream 73946 23399396 ~ 23404624 (+)
LOC110491671 LOC106579157 coding downstream 105417 23430867 ~ 23488782 (+)
becn1 becn1 coding downstream 226343 23551793 ~ 23567658 (+)
trnag-ccc-4 NA coding downstream 265248 23590698 ~ 23590769 (+)
trnaw-cca-8 NA coding downstream 266426 23591876 ~ 23591947 (+)
G1353664 NA non-coding upstream 22916 23301366 ~ 23301601 (+)
G1353663 NA non-coding upstream 23648 23300574 ~ 23300869 (+)
G1353662 NA non-coding upstream 24098 23300023 ~ 23300419 (+)
G1353661 NA non-coding upstream 25379 23298907 ~ 23299138 (+)
G1353659 NA non-coding upstream 26401 23297433 ~ 23298116 (+)
G1354035 NA non-coding downstream 1477 23326927 ~ 23327275 (+)
G1354038 NA non-coding downstream 5018 23330468 ~ 23330682 (+)
G1354041 LOC106579162 non-coding downstream 8113 23333563 ~ 23333849 (+)
G1354042 NA non-coding downstream 8591 23334041 ~ 23334751 (+)
G1354045 NA non-coding downstream 12333 23337783 ~ 23337999 (+)
G1353660 NA other upstream 25764 23298457 ~ 23298753 (+)
G1353519 NA other upstream 278633 23045269 ~ 23045884 (+)
G1353021 NA other upstream 692212 22631879 ~ 22632305 (+)
LOC110491629 LOC106579195 other upstream 1324266 21727617 ~ 22001169 (+)
G1354668 NA other downstream 668168 23993618 ~ 23995021 (+)
G1354681 rpl19 other downstream 760258 24085708 ~ 24090034 (+)
LOC110491698 LOC106579132 other downstream 1344989 24670341 ~ 24681115 (+)
G1355273 NA other downstream 1355964 24681414 ~ 24684055 (+)

Expression


Co-expression Network