G1354047


Basic Information

Item Value
gene id G1354047
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23339494 ~ 23339707 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1547878
gcaagacagccattttcaagtcttgccatagattttcaagccgatttaagtcaaaattgtaactaggACATTCAGTCACATTCACTGTtgccttggtaagcaactccagtatagatttgaccttgtgttttaggttattttcctgctgaaaaggtgaatttgtctcccagtgtctgttagaaATTTCCTCTATGATTTTGGTTGTGCTTATTTC

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1547878 True 214 lncRNA 0.37 1 23339494 23339707

Neighbor

gene id symbol gene type direction distance location
LOC110491666 LOC106579166 coding upstream 75185 23248659 ~ 23264309 (+)
LOC110491663 LOC106579167 coding upstream 104204 23217413 ~ 23235290 (+)
LOC110491660 LOC106579168 coding upstream 125654 23208126 ~ 23213840 (+)
LOC110491658 LOC106579351 coding upstream 213038 23123859 ~ 23134383 (+)
LOC118939472 NA coding upstream 217642 23113394 ~ 23121852 (+)
LOC110491669 LOC106579159 coding downstream 59689 23399396 ~ 23404624 (+)
LOC110491671 LOC106579157 coding downstream 91160 23430867 ~ 23488782 (+)
becn1 becn1 coding downstream 212086 23551793 ~ 23567658 (+)
trnag-ccc-4 NA coding downstream 250991 23590698 ~ 23590769 (+)
trnaw-cca-8 NA coding downstream 252169 23591876 ~ 23591947 (+)
G1354045 NA non-coding upstream 1495 23337783 ~ 23337999 (+)
G1354042 NA non-coding upstream 4743 23334041 ~ 23334751 (+)
G1354041 LOC106579162 non-coding upstream 5645 23333563 ~ 23333849 (+)
G1354038 NA non-coding upstream 8812 23330468 ~ 23330682 (+)
G1354035 NA non-coding upstream 12219 23326927 ~ 23327275 (+)
G1354051 NA non-coding downstream 4342 23344049 ~ 23345102 (+)
G1354052 LOC106579161 non-coding downstream 7104 23346811 ~ 23347286 (+)
G1354053 NA non-coding downstream 8337 23348044 ~ 23348305 (+)
G1354065 NA non-coding downstream 30394 23370101 ~ 23370338 (+)
G1354070 NA non-coding downstream 34280 23373987 ~ 23374230 (+)
G1353660 NA other upstream 40741 23298457 ~ 23298753 (+)
G1353519 NA other upstream 293610 23045269 ~ 23045884 (+)
G1353021 NA other upstream 707189 22631879 ~ 22632305 (+)
LOC110491629 LOC106579195 other upstream 1339243 21727617 ~ 22001169 (+)
G1354668 NA other downstream 653911 23993618 ~ 23995021 (+)
G1354681 rpl19 other downstream 746001 24085708 ~ 24090034 (+)
LOC110491698 LOC106579132 other downstream 1330732 24670341 ~ 24681115 (+)
G1355273 NA other downstream 1341707 24681414 ~ 24684055 (+)

Expression


Co-expression Network