G1354168


Basic Information

Item Value
gene id G1354168
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23782449 ~ 23784110 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1548009
TATCCATTTAAACccattatttatgtatttatttaaatgtgtCCCTTGCAAAAGTGGATATGAAAAACAATGTAAAAGCATTACAAACGTTTTTTTTTACAATGCAGACCCTGTGAATTGGATATGGAATGATGTCATCATAGTAAGAGTAAGAGCGTACTCTGTGCTTCCTTCCTTTTCTGGTAATGGGGATGTTTTGAGCAAATAAAAACGGTGTCCGGAGTCAGTGAAACCTGTCATCAGTGACATCTTGGCTGGAGGTCCAGTTAAAGTTAAGTCTTACAAATGATTGACAGCTTAACTGGCCCATAATCCACAAGGGCAGTTGATTTAAAGGAAACAAGTGCAACATTATATACAGTGAACAAATATCTTAATAACACGTCACATTTATGAATACAAGACACCGACTATGATGCTTCCACTAAAGGAGGAAATGTATTCATGTGATTGAGAGATGatttgtggtgttgatggtataccTGAACATTATATTGACAATAACTGGGAATGTAAGAAGAGAGTGCTGGTTTCACATACAAACAAAGACGCCACACCTCTTTACCAAACGGTCGTTTCAGAGTTGGAgtcctgatctaggatcaggttccccatatccatgtaatcttattcattatgatctgatCCTACAGCAGCACTCCTACTCGAATACGCTATGGATATGGGGCAATGTGCGGTACATAGAATCATAATATACAACACGGCTGGCGTAAAAACATTTAAGCATCATTTTTTTTGCATATCTGAGAGATGTTGCAAGTCAATGCCAACAGCTGAAGGAAACTGTTTATCTGTGAAATGAGAATGCGGGAGAACCCAAAGGCATTTTTTTGTTTTAGCAAAGTGACAGATCGCTAAACCACATGTCTCAGAAATGTTATTTGGACAATGTGCTTATCATGCCAGACTCTTACaaacaggaaatgacaacacGCTGATGAGTAAGTGATGTCATGCGTATGCTATGAGTATCAttatcagtcaatcaatcaaatgtatttataaagccctttttaacgtcagccgatgtcacaaagtgctgtacagaaacccagccctaaaccccaaacagcaagcaacgcagatgtagaagcacagtggctaggaaaaactccctagaaaggcaagaacctaggaagaaaccaagagaggaaccagactctgagggGTGGCCGTCCCCTTCTATTTGTCCTTCGCTTCTCTGTCACTAAAGAAAGTAATGTGCCTAACTCGAGTCACGTCTACTGTCGTACATTTATCTCTCAATGTAGCCGACTCTACTTTCATTAATGGACAGCCTAAGTTACAATTATGGATTTTGAATGAACTTGTTGGTAGTTCATGTTGAAATGCCTCCGGAAAAACATATTTGGTACCGTTTAAATACATATGTACAACAAACCACTACACAAATATTACATCTTCGTCTTGTGACAGTAGAGCCAGCACATGAAATCGTAACATTCCAGAGGAAATTGAAAGAATCCAATGGGATGCAGTTATTTTAATGATCCTTCAAATGATGCAGTCATTTCAGTGATCCTGGTTGCCATCACTCCTTGTTGCCTCTGTATGTGATGTTTGTGAAGGTTGAGGTGGCTCCTTTGTACAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1548009 True 1633 lncRNA 0.39 2 23782449 23784110

Neighbor

gene id symbol gene type direction distance location
trnaw-cca-55 NA coding upstream 96700 23685678 ~ 23685749 (+)
trnaw-cca-54 NA coding upstream 97932 23684446 ~ 23684517 (+)
trnaw-cca-53 NA coding upstream 101072 23681306 ~ 23681377 (+)
trnaw-cca-52 NA coding upstream 102149 23680229 ~ 23680300 (+)
trnaw-cca-51 NA coding upstream 103941 23678437 ~ 23678508 (+)
neurod2 LOC106579148 coding downstream 113511 23897621 ~ 23901382 (+)
med1 med1 coding downstream 145717 23929827 ~ 23952690 (+)
gpam gpam coding downstream 317969 24102079 ~ 24147369 (+)
LOC110491683 LOC106579144 coding downstream 382080 24166190 ~ 24201252 (+)
ghdc ghdc coding downstream 428069 24212179 ~ 24234669 (+)
G1354215 NA non-coding upstream 70393 23703899 ~ 23712056 (+)
G1354199 NA non-coding upstream 161547 23597617 ~ 23620902 (+)
G1354136 NA non-coding upstream 275633 23505186 ~ 23506816 (+)
G1354115 NA non-coding upstream 321932 23454181 ~ 23460517 (+)
G1354114 NA non-coding upstream 323077 23453127 ~ 23459372 (+)
G1354281 NA non-coding downstream 43792 23827902 ~ 23916365 (+)
G1354286 NA non-coding downstream 50749 23834859 ~ 23859610 (+)
G1354172 NA non-coding downstream 67213 23851323 ~ 23856448 (+)
G1354301 NA non-coding downstream 83822 23867932 ~ 23869808 (+)
G1354667 NA non-coding downstream 207815 23991925 ~ 23992720 (+)
LOC110491671 LOC106579157 other upstream 293837 23430867 ~ 23488782 (+)
G1353660 NA other upstream 483696 23298457 ~ 23298753 (+)
LOC110491658 LOC106579351 other upstream 656138 23123859 ~ 23134383 (+)
G1353519 NA other upstream 736565 23045269 ~ 23045884 (+)
G1353021 NA other upstream 1150144 22631879 ~ 22632305 (+)
G1354668 NA other downstream 209508 23993618 ~ 23995021 (+)
G1354681 rpl19 other downstream 301598 24085708 ~ 24090034 (+)
LOC110491698 LOC106579132 other downstream 886329 24670341 ~ 24681115 (+)
G1355273 NA other downstream 897304 24681414 ~ 24684055 (+)
dcakd dcakd other downstream 980529 24764607 ~ 24783513 (+)

Expression


Co-expression Network