G1354281


Basic Information

Item Value
gene id G1354281
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23827902 ~ 23916365 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1548134
GTTCAACGTTTTTATTTCACTTCAGGCAAAGTCAGTGAAGCCACAAGCCAAGTTAACATTGACCAACAAGCCAAAAGTAGCCAGAGAAAATAACACATAACACAATAAGAGACaacaataaaaatacattttaaacataCAAAAGGATTTGTTAATGGTTTTGAGAGCATAGAACtttgatgtaaaaaataaaataaaatctaactCAATTTATGACTAAAAGCCTATTTAGTCCTTTCCGTGACAAActaacaattttttttaaacagctaaCAACATGGCCAATCGCTGAGTAACCCTAAAAGGCTAACCATAATCCTGATAGAAAATAACTTCACTGTTAGATTTACATGACTTCTCGGGTCGAAGTTCAAGTATGAAAACATACTTGGGTCTTCCACCAAGCTAGTCCAATTCAGGCTCTATGAAGTAATTGCCTTTGAATGCGTTGGGTGCACACCCAAATagtggctgcatttacacaggcagtccaattATTTTGACCAATAAGATCAGCTCTTTTGcgaataattgggcaaaagatcagaattggactgcctATGTAAATGCAACCAGTGGGATCAAGACTAAGATCATGACACGTCAGTGAGTTCATTTCAACAGTAGGGGGCAGAAGTAGACCTTTTATTCTTTAAGTCAAATGTCAGTGAAGGGCCATAAATGTAATTTATTGTGGAAATTGTTAGCAATCTTCCtctcctactctttctccctTTCACTTCTCCCATTAAAAATACTATTTTCTTTATGTGTTTTTAATCTCATATTATTGTTTACTTCCTCACTGTTCTGATCCaatctttcccctctctccttctcctctttttaAATACAGTTTGCCTGCTCACTATTCCAacatcctctacctctctctctctttttgaacTCCGTATCTTCCTCATCATCTATTGTTTACTTTCTGACCTCATCTCTTTTAGACTTCTACTCATCCTAGTCTCTTCCAACCTctcacatcctcctcctcctcctacttccactactctctctctctctctctgtctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1548134 True 1046 lncRNA 0.37 2 23827902 23916365

Neighbor

gene id symbol gene type direction distance location
trnaw-cca-55 NA coding upstream 142153 23685678 ~ 23685749 (+)
trnaw-cca-54 NA coding upstream 143385 23684446 ~ 23684517 (+)
trnaw-cca-53 NA coding upstream 146525 23681306 ~ 23681377 (+)
trnaw-cca-52 NA coding upstream 147602 23680229 ~ 23680300 (+)
trnaw-cca-51 NA coding upstream 149394 23678437 ~ 23678508 (+)
med1 med1 coding downstream 13462 23929827 ~ 23952690 (+)
gpam gpam coding downstream 185714 24102079 ~ 24147369 (+)
LOC110491683 LOC106579144 coding downstream 249825 24166190 ~ 24201252 (+)
ghdc ghdc coding downstream 295814 24212179 ~ 24234669 (+)
kcnh4b kcnh4 coding downstream 326175 24242540 ~ 24311996 (+)
G1354168 NA non-coding upstream 43792 23782449 ~ 23784110 (+)
G1354215 NA non-coding upstream 115846 23703899 ~ 23712056 (+)
G1354199 NA non-coding upstream 207000 23597617 ~ 23620902 (+)
G1354136 NA non-coding upstream 321086 23505186 ~ 23506816 (+)
G1354115 NA non-coding upstream 367385 23454181 ~ 23460517 (+)
G1354667 NA non-coding downstream 75560 23991925 ~ 23992720 (+)
G1354669 NA non-coding downstream 76518 23992883 ~ 23993194 (+)
G1354673 NA non-coding downstream 87078 24003443 ~ 24003684 (+)
G1354697 NA non-coding downstream 130454 24046819 ~ 24047201 (+)
G1354702 NA non-coding downstream 136423 24052788 ~ 24053126 (+)
LOC110491671 LOC106579157 other upstream 339290 23430867 ~ 23488782 (+)
G1353660 NA other upstream 529149 23298457 ~ 23298753 (+)
LOC110491658 LOC106579351 other upstream 701591 23123859 ~ 23134383 (+)
G1353519 NA other upstream 782018 23045269 ~ 23045884 (+)
G1353021 NA other upstream 1195597 22631879 ~ 22632305 (+)
G1354668 NA other downstream 77253 23993618 ~ 23995021 (+)
G1354681 rpl19 other downstream 169343 24085708 ~ 24090034 (+)
LOC110491698 LOC106579132 other downstream 754074 24670341 ~ 24681115 (+)
G1355273 NA other downstream 765049 24681414 ~ 24684055 (+)
dcakd dcakd other downstream 848274 24764607 ~ 24783513 (+)

Expression


Co-expression Network