G1354820


Basic Information

Item Value
gene id G1354820
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24282467 ~ 24282671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1548707
CGTTTTTTGTAAAATATATGTCAAAGGAATGACTTTATTTCACATCTGTTGAATTTCTTTTAATTGTTTTGAATGAAATTATATTCAAATTCTGCTTCCTCTGAGGTGTGTCCAATGCAAATTTAAATTCTTGGGTTGAATTGAATTTAAATGAAGAAATTCCTAATTGATCCcaaatttgacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1548707 True 205 lncRNA 0.30 1 24282467 24282671

Neighbor

gene id symbol gene type direction distance location
ghdc ghdc coding upstream 47798 24212179 ~ 24234669 (+)
LOC110491683 LOC106579144 coding upstream 81215 24166190 ~ 24201252 (+)
gpam gpam coding upstream 135098 24102079 ~ 24147369 (+)
med1 med1 coding upstream 329777 23929827 ~ 23952690 (+)
neurod2 LOC106579148 coding upstream 381085 23897621 ~ 23901382 (+)
LOC110491689 rab5c coding downstream 67338 24350009 ~ 24363391 (+)
LOC110491690 znf385c coding downstream 99570 24382241 ~ 24520933 (+)
LOC110491693 LOC106579137 coding downstream 239327 24521646 ~ 24560785 (+)
LOC110491694 atp6v0a1 coding downstream 280114 24562785 ~ 24602678 (+)
LOC110491695 NA coding downstream 323393 24606064 ~ 24607211 (+)
G1354819 NA non-coding upstream 429 24281811 ~ 24282038 (+)
G1354818 NA non-coding upstream 966 24281278 ~ 24281501 (+)
G1354812 NA non-coding upstream 10109 24272090 ~ 24272358 (+)
G1354796 NA non-coding upstream 35060 24247140 ~ 24247407 (+)
G1354772 NA non-coding upstream 73991 24187265 ~ 24208476 (+)
G1354827 NA non-coding downstream 46837 24329508 ~ 24330130 (+)
G1354834 NA non-coding downstream 55919 24338590 ~ 24338795 (+)
G1354837 NA non-coding downstream 57557 24340228 ~ 24340617 (+)
G1354836 NA non-coding downstream 58029 24340700 ~ 24343798 (+)
G1354838 NA non-coding downstream 61777 24344448 ~ 24345329 (+)
G1354681 rpl19 other upstream 192433 24085708 ~ 24090034 (+)
G1354668 NA other upstream 287446 23993618 ~ 23995021 (+)
LOC110491671 LOC106579157 other upstream 793855 23430867 ~ 23488782 (+)
G1353660 NA other upstream 983714 23298457 ~ 23298753 (+)
LOC110491658 LOC106579351 other upstream 1156156 23123859 ~ 23134383 (+)
LOC110491698 LOC106579132 other downstream 387768 24670341 ~ 24681115 (+)
G1355273 NA other downstream 398743 24681414 ~ 24684055 (+)
dcakd dcakd other downstream 481968 24764607 ~ 24783513 (+)
znf281b LOC106578343 other downstream 1793870 26076461 ~ 26107407 (+)
mpp3b LOC106579097 other downstream 2022280 26283071 ~ 26314809 (+)

Expression


Co-expression Network