G1354836


Basic Information

Item Value
gene id G1354836
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24340700 ~ 24343798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1548724
GCACGAATTTCTTGGATATTTATTTTAcgcatagccaggggcacactcgaacataatttacaaatgaagcatttgtgtttagcgaGTCCGCCAGTTCATAGGCAggtgggatgttctcttgataagtgtgtaaattggggcattttcctgtcctgttaagcattcaaaatgtaacgagtgcttttgggtgtcagggcaaatgtatggagtaaaaagtacattattttctttcggaatgtagtgaaataaaagtgctaaaaaatataaatagtaaagtacagatacccaaaaaagacttaagtaaaaatactttaaagtaatacttaagtactttacaccactaaaAATTACATGTGGCATGACTAATAAAACACAGAAGATGCGTAATTGATTTGTAGCACAGGATGAACACATATACACCTGAGGCAGTCATGTTATCAATTCTCCACGAGGAATACAATCTAAAACGACACTTTCATCATAATAATGAGTCAAAGTAAAAGTCATTTGCAGTACTAAAAGTAAATTCAGTAGAAACATTTGGTGAGAAGGGGTTGCTGGTGTTACTTACTGGATTCGAGACCAGGTCTCCTGTGcaccacaagactgtgttagcctgctgagcttAAGCCTGCCCATCACCTTGTAAAaccaagtcttcaggtctcaggctgGGTTACTTAAATAGGAAAATGTACACACAACAGCTGGACTCAACTGACTACTCACTGTAAAAAAAAGCTTTTGCACATCATACACACcgttaaaatgttttgttttaaaacaatgttttttcaTATGTCTTTGCAGGTGTTTTTTGTGAGATAGCGCAACTTGCATAAAGTGCATGCAAATGGCCGTTCTCCTGTATGAATCAGTCGATGGGATTTCAGACTGGCCTCTGTAGAAAAACTTTTGCCGCAGTCTCGGCAAGGGAAAGGGCGCTCTCCTGTGTGTGCTCTCATATGTTCTTTCATTCGAAACAGCATCAGGAAATCCTTACCACATATTTCACAAAGATAGGGTTTCTGAGTGGGGGATGTATCGGAGTTTATAAGGTTTAAAGAGCTGTGGGACTGTggaatctctgtctcactctcccttGTTGCCAGAGAGCTGCTGCTATCTGCTGGATCAACATCCCTTTGGTGCTGGTTTGGATCGACTCCCTCATTTGACTCCATCAAGTCTTGCTGTGGTCTCTGAAAGCACTTTTTTTTATGCTCCCTCAAATGAGAGTTCTTTATGAAATTTCCTCCACAGCCCAGGCACTGGTAAGGGAGCTGGCCATGCTGGGATTTGAGGTGCTTTCTCATAAAAAATGTACTGTCAAAAGTATTGTGACACAAGCGGCATGTTCTGGCTTTGACGGACTCCTTGGGTTGGAGACTTGGAGTGGGATGGCGCTCTTTCCTATGTGCTTTCAAATTAATCTTCCTCTTGAAATTCTCTCCACATCAGAGGCACTGGTAAGGGAGCTGAGCATGTTTGGAATTCAGGTGCGTTCGCATTAAAGCTATACTGTTGAAAGTCTTGTGACACAGACGGCATGTTCTGGCTCTGAAAGAGTATCTTTGATTGCGACCAACATTGGAAGTGTTGTGGGGCTGGGatgtctccatctcctcctcaaaAGATGGTGTAAACGTGTTAACCTCTTCCAGTTGAGCTGCCTCCTCACGAGCATTCTGCAGATGTTTCTCTAAGTTCTCCTGATGTTCAAAGCTTTGCAAACACTGGGTGCACTGGTAAGTGCATGATCTCCAGGGTGCTTTCAAATCGTGTCCTTTAATGAATGTTTCATTACACATCGAGCAAAGGTGGCGCCTCTTTGCAGCTAAGCACACTTTAGGTTCTTTCAAATTAGACCTTTTCTCGTGAGAGCTCATGTGTGCGGTCAACCCCCTTGCTTCAATGAAGGTCTTCTTGcacagagagcaagagaagagCTTTCTCACTGCCAAGCACTCTTTTTTATGCTCCTTCAAATGACACCTTTTTCCTCAAACTTTTCTCCACAGCTGAGGCAGGAAAACATTGTGGGGCAGTTTTTCGTATGTTCCTTCAAATGACATTTCCTCTTAAAATGTTCTCCACAATCGCGGCACTGGTAAGGGAGCTGATCATGTTGGGATTTTAGGTGTTTTCTCATTAAATATGGGCCGCCGAAAGTCTTGTTACACAAATGGCATGTTCTGGCTTTGGATGACAGAGTGGGATGGCACTCTGCCTTATGTTCCCTCAAATGAAACTTTCTCTCGAATTGTTCTCCACAGTCAAGGCACTGGTAAATGAGCTGATCATGTTTGAAAATCATGTGCTTTCTCATTGAATATACAGTATAGAAAGTCTTGTGACATACGTGACATGTTCTGGATTTGGAGGACTGTCTGGACTTGGAGGACTGTCTTGGAGTGGGACAAACTTCGGAAGTTGTTGGGCTCAGGGGTGAAGTGCCATGGGGCTGGGATATCTCTATCCCATCCTCAAAAGATGTAGACATGTTAAGCTCTTCAAAAGACTGGTAAGGACTCTGCTCAGTGTGAGATCTCATGTGTGCCATCAAATCTTCTGCTTCAATAAAAGTCTTCCCACATAAGGAGCACATTTTGACACGCTTGCTTCTGTTAGATTTCCCCATTGTATAGGATGGGTCAGGCGTCAAAGAATACTGAGGTACACTCTTTATCCTCAATGTTGGACTCAATGTTGGAGAGGACACAGGTAACGGCATATCAGCAAGGTCAAGTCTGTGCAGCAGCACTGTGGGCTGAAGGAACAGACAGGAAGTAGACAAACTAGAACTCTCCTGTACTTCCGGTTGGCTGCTGTGAGGGTTTCTTTGGATTTTCAGCCTACTGTCAGTTTGAGGTTGGTGAAAATGTCTGTTCATTTCTGACTCGTTGACAGATGAGGCAGAGCTTAGAATGTTCATAAACCCTTGCATAGGATCGGATTTGATCTCTGTTTCAAAGATCTCAACTGTTTCTAGGAGCGAGAGTGACAGCGAGCTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1548724 True 3015 lncRNA 0.43 2 24340700 24343798

Neighbor

gene id symbol gene type direction distance location
kcnh4b kcnh4 coding upstream 28704 24242540 ~ 24311996 (+)
ghdc ghdc coding upstream 106031 24212179 ~ 24234669 (+)
LOC110491683 LOC106579144 coding upstream 139448 24166190 ~ 24201252 (+)
gpam gpam coding upstream 193331 24102079 ~ 24147369 (+)
med1 med1 coding upstream 388010 23929827 ~ 23952690 (+)
LOC110491689 rab5c coding downstream 6211 24350009 ~ 24363391 (+)
LOC110491690 znf385c coding downstream 38443 24382241 ~ 24520933 (+)
LOC110491693 LOC106579137 coding downstream 178200 24521646 ~ 24560785 (+)
LOC110491694 atp6v0a1 coding downstream 218987 24562785 ~ 24602678 (+)
LOC110491695 NA coding downstream 262266 24606064 ~ 24607211 (+)
G1354837 NA non-coding upstream 83 24340228 ~ 24340617 (+)
G1354834 NA non-coding upstream 1905 24338590 ~ 24338795 (+)
G1354827 NA non-coding upstream 10570 24329508 ~ 24330130 (+)
G1354820 NA non-coding upstream 58029 24282467 ~ 24282671 (+)
G1354819 NA non-coding upstream 58662 24281811 ~ 24282038 (+)
G1354838 NA non-coding downstream 650 24344448 ~ 24345329 (+)
G1354839 NA non-coding downstream 1587 24345385 ~ 24345726 (+)
G1355072 NA non-coding downstream 26625 24370423 ~ 24370721 (+)
G1355107 NA non-coding downstream 45965 24389763 ~ 24389983 (+)
G1355110 NA non-coding downstream 50861 24394659 ~ 24395032 (+)
G1354681 rpl19 other upstream 250666 24085708 ~ 24090034 (+)
G1354668 NA other upstream 345679 23993618 ~ 23995021 (+)
LOC110491671 LOC106579157 other upstream 852088 23430867 ~ 23488782 (+)
G1353660 NA other upstream 1041947 23298457 ~ 23298753 (+)
LOC110491658 LOC106579351 other upstream 1214389 23123859 ~ 23134383 (+)
LOC110491698 LOC106579132 other downstream 326641 24670341 ~ 24681115 (+)
G1355273 NA other downstream 337616 24681414 ~ 24684055 (+)
dcakd dcakd other downstream 420841 24764607 ~ 24783513 (+)
znf281b LOC106578343 other downstream 1732743 26076461 ~ 26107407 (+)
mpp3b LOC106579097 other downstream 1961153 26283071 ~ 26314809 (+)

Expression


Co-expression Network