G1355097


Basic Information

Item Value
gene id G1355097
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24602897 ~ 24656808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1549008
agggtaaggaaaccgaTATGTATttgtgtaatttgggtgaactatccattTAACAGTCATCGATAACTCAAATTCCCATGGTCAAGCACATACTTCCATCCACCCTCATCATCCCTGGATTTCTGAACTCACTTCTTAGGGTTCCTGGTTTTTTGATTCCCTGGTCTATTGTTGAATACTTCAGTAATTGATTTCCATGTATGAAGGTAAAGCCCTCAGAGATTTACAGGCCTCCTTTGTTTGAAACAAGAGGAACAACATCAACATGGCCCTGAATACACAAAATGGGAGCTCCTCTGCCAAGCCATCCCACCCACTTCCCAATCCCCCCCTTCCATATGGCCTCAGAAGCCTGTGGAAACAAACAACCTGTTAGGACAATGCATCGTTATAATGGGAACTCCAGGCTAACCTCTCATGCCTCTTCCTGATCAAATCCAGGCATACAACAGCTATACTCAATAGGCGGTCCGCATTCTGCATCCGAACACAGAACGGGGTCAATACGGACCACGGGTCTTGACAAAAATAAACTAAATCACAACTGAAGTGGACTGTTTTTGGAATGACGTTGGCCTAATTGTCCCTCTTTTCGTAGGCTAATTAGTCTAGAGGCCTTGGAGGATGTTCTATGTACAACCTGGTTGCCGGGGGACATGAGTGTATTACCAGCTGAGCACAGATGATAGTGGAGATCCATAGCGCCCACTAGCGGCTGCCTAGGCTAGCATGAGGCACGTGGCAACAATCCACTGCAAAATAAAATGTGCCAGGGTGCACTCCCGCATTCCCCCGCCCGCAATTTCGGACATTCCTCAatgtgggcattcctgcatctgCAGAAACCCCCTTTTATACTTTTATTGGTCCATTTTTAAGCTATGACTCCGGCACAGGAGGGAGGCTGGAGCTATCCAATACAGTAGGTGGCAATAATGTAAATAATGTTGGATTCCAACTGCCGATAAAGAATCGGCAGAGGGTGACAACAATAGCTAGCTATAGCCAGTACACGGGGTAGGGACGACCGGTAGACAATGTCTTTCACGCCCGCCTGTCGGTCACTGTTTTACCGAAGGAGGAttctggtagaaattaggttGGGGGCGAAAAACACATAATACTTTTATTCCCCTTTTGACCCACATTCAAACGTGTCACACAAGCATGAAGATGTTGTGCTCAAGGGGGTGCATTCATGCAAGACCAGTGGGGTGCTTGAGGGAGGGGTGTTCATGCAGGAACAAGAACGCCACCCACGCAGGAACGCCCGCATTGTGGGTTGCAGTTGCACACTATTAGCTGGTTTCCGCCAAATGGATAGCAAGCACGCTCGTGGCCATCAGCTCCTTGAGTTTTCTGACGTGATGGCCAGAGAAGCATGAAggagattaaaaaatatatatatatatttaacctttatttaactaggcaagtcataaAGAATCTTGAGTAATAAAACAGGCGAACACCCGAGAAAGTTATTTAGCAAAGAAACGCTGCCAGAGGTAACACAAGAGGGAGCTCAACCCTTCAGTCGATGAGTGGGAGATATGAGAGTAGCTGACCAACAACCACCATATGACTGCACATTTGGACTGGGGATACCCCaagcccactccctccctccataaacTTGGCAGACTTCATTTCCCTTTCAAAGCATACAAATTCCTGTGAAGATTGGTACAAGTCTCGAGCTCTCTGGAACATGGAAGCACTATTtgtatttgaaagaaaatcagATAGGCATAAGCATGTCCAGGAGAACTTAATTATCCATTTTAAATGAAAGAGGAGAAACGTCTGGTCTCCGCTAAAGCACTATTTTTTATCATTCTTTATTTTATAACTGCGATAACAGGTCTTTTCTCCTGTCAATAGCCTTAGGAATTGTAATATTTATACGGTAGTAATGTATCTAGCCTAAATGTGTCTAGCCTAAATGTGTCTAGCCTAAATGTGTCTAGCCTAAATGTGTCTAGCCTAAATGTATCTAGCCTAAATGTGTCTAGCCTAAATGTGTAAAGAcccctttaccttttccacattttTTTGTGTTGCAGCACATGGTATGAAGGTGTGTAAGACCCCACACGTGGGCCATTTTGTTTTTCAGCTAAGTGTTAAGTTCTGTCCATTTCTTTTTTAGTCCTGGTCAGTATTCTGTTTCTCTGTGAGGAAGACGTGCCTCTGAGTTCAGAGGCCGTTTCCTAAAGTTTCAATTCAAGACTGACAACTCTCATGCCTACACTCCTCTCTCCGTCTTGCAAGATGTCTCTTTCTCCTCAAAGTCGGTTAAATTTTCCATTAGTCGGTGTCGTTGGGAAGCCATAGCATGGCCCCGCCTGAACAGACCCTCTGTTTTTAGTCTATTCTTCTTCGACAGGTATTTTCCCAGTCTCCTGTCGGTCTGAGATTATCTCCATTTACAACTGCCAGGGAGCAGTTTTTATTAGGGTGGGTGTGACTCTTACGATGGCCTCATCATTTGTCTGTGTTACGAAAGTTCTTGTGAGAGGGAGTTGGGTGTTTTCCTGTCCAACATCATGGGATGTTGAACAAGGAAACCTTTATTAGACACACCACATGACCTCGGTCGTGTCTCTTGAGGGACAGATTTCAAACTTTTCCTGGTGTGACTGCTTCCTTTTGTTTATACATCTTAGTGAACACTCTGTCAGCAATATCTCGGAAGAGCAGGAAGACAAGTCAGTTGTCTGTCTGATTCCATCTGCCTATAATTATTCCTGGTTGGCCAGAAACAAGTCCCTTCCCTGATTCCTGAAAGGTTTATGACTCATGATATGAGGGTTGGGCAAAAAGGGGTCTTGGGGGTGAACATAGAGAGAGATCACCCCGTCTCATGACAATCACACTATGGGAATGTGATCCCATGACCCCTAGAGTTACAACACCCCTCCCTACTCAAACTACTCCAACAGTTTCAgaaaaattcttgcttgagaaattgctcttttctgtgaagctattttttttttaaatggctgaTTTCGCCTCATAAGAAATGCAATGAAAATATGAGATTTGTGTCTTGGAGGGGTGCATTGATGTAGCTTTTCTTGTGTGCATGTCGTCGCACGTGGGATGCATTCAAACATTCActctattttattttaatttcacctgtatttaacctggtaggcc

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1549008 True 3168 lncRNA 0.44 2 24602897 24656808

Neighbor

gene id symbol gene type direction distance location
LOC110491694 atp6v0a1 coding upstream 219 24562785 ~ 24602678 (+)
LOC110491693 LOC106579137 coding upstream 42112 24521646 ~ 24560785 (+)
LOC110491690 znf385c coding upstream 81964 24382241 ~ 24520933 (+)
LOC110491689 rab5c coding upstream 239506 24350009 ~ 24363391 (+)
kcnh4b kcnh4 coding upstream 290901 24242540 ~ 24311996 (+)
LOC110491698 LOC106579132 coding downstream 13533 24670341 ~ 24681115 (+)
coasy coasy coding downstream 28122 24684930 ~ 24700595 (+)
pus3 pus3 coding downstream 93300 24750108 ~ 24759143 (+)
dcakd dcakd coding downstream 107799 24764607 ~ 24783513 (+)
LOC110491705 ud2a2 coding downstream 169355 24826163 ~ 24829318 (+)
G1355148 NA non-coding upstream 158146 24444301 ~ 24444751 (+)
G1355110 NA non-coding upstream 207865 24394659 ~ 24395032 (+)
G1355107 NA non-coding upstream 212914 24389763 ~ 24389983 (+)
G1355072 NA non-coding upstream 232176 24370423 ~ 24370721 (+)
G1355100 NA non-coding downstream 709 24657517 ~ 24657836 (+)
G1355269 NA non-coding downstream 10785 24667593 ~ 24667950 (+)
G1355273 NA non-coding downstream 25108 24681414 ~ 24684055 (+)
G1355304 NA non-coding downstream 84251 24741059 ~ 24741347 (+)
G1355305 NA non-coding downstream 84547 24741355 ~ 24741580 (+)
G1354681 rpl19 other upstream 512863 24085708 ~ 24090034 (+)
G1354668 NA other upstream 607876 23993618 ~ 23995021 (+)
LOC110491671 LOC106579157 other upstream 1114285 23430867 ~ 23488782 (+)
G1353660 NA other upstream 1304144 23298457 ~ 23298753 (+)
LOC110491658 LOC106579351 other upstream 1476586 23123859 ~ 23134383 (+)
znf281b LOC106578343 other downstream 1419733 26076461 ~ 26107407 (+)
mpp3b LOC106579097 other downstream 1648143 26283071 ~ 26314809 (+)

Expression


Co-expression Network