XLOC_003271 (CR848705.1)


Basic Information

Item Value
gene id XLOC_003271
gene name CR848705.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11792408 ~ 11796299 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006452
acaaataaacaaaagctcTTATTTATGGCACATTAAAGCGAAGACTTCcaaaatttgtaaattaaaagcGAGTAGTTTCTGTTGTGGGTAATTTGGCGCCAAGCTGTATATTCACGCGCTAAATATAACGCTGAATAAAAGCTGATTTACTCAATAAATGCTGTCTAACAGTGTTTTTAGAACTATAGAATTAATACATGCTAATGTCTTACCTTTAAATAGTTGAATTTGTTGACTGTGTGTGCTATAATCAAAAGCTGTAGTTTCTCTGCTCCTGAAACCGACTTCCTCCGCCGTCAAACTAGCGCCAAATGTGATGTTGTGAACTCCTTCTCGGATCAGCTGGTGCGTTGGTATGTGACGTACATCCTACAACAACCGCATTTCATTGGCTCTCGAAGGTCCTCTTGTTTTAGGAACCAATAGGATTCCTATTAGTCCCTTCCCCCCCAGTGGTTTGACTGTAAAGGCGGGTGTCGCTTTGTTGGCGTTTGGCGGAAAAATTTTCCCGGTAAATATGAAGATTATGTTTTGGACAGCGGGGTTTTAAATGGTGTAAAAACCGAAGCTTTCAACCAGATAAAGTGCTGGAGGGtccaaaaaatatttcaaatctcATCTGGGAAATATAACTCGATGCATCTTGCGGCAGAACACATACATTGCAACAAGGCATTATGGGATTGACATGGTTGCAGAACAGAAATGGCTCAGGAAGAGGTTTGCATTCTTCAAGGATGGAGAATATAAAACAACACCTACATAAAAATATACATCtcctattttatttgtattgttgttttttcgAATATGAATATGTGCCTGTTATTATTTCTGTGCCAACAGCGCCCCCAGCTGGACAGAGTATGGTCATATCAAGTCAAATCTAAAACTTAAGACcgcttaaaatgtataaattgttttttaaatagag

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102054

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006452 True 934 lncRNA 0.38 2 11792408 11796299

Neighbor

gene id symbol gene type direction distance location
XLOC_003270 jupa coding upstream 10497 11719575 ~ 11781911 (+)
XLOC_003269 CR556712.1 coding upstream 201732 11588078 ~ 11590676 (+)
XLOC_003268 NA coding upstream 278423 11504014 ~ 11513985 (+)
XLOC_003263 si:dkey-23f9.11 coding upstream 359929 11430552 ~ 11432479 (+)
XLOC_003261 si:dkey-23f9.13 coding upstream 371302 11419186 ~ 11421106 (+)
XLOC_003272 pimr93 coding downstream 727 11797026 ~ 11804720 (+)
XLOC_003273 NA coding downstream 12924 11809223 ~ 11823154 (+)
XLOC_003274 NA coding downstream 24065 11820364 ~ 11854446 (+)
XLOC_003275 NA coding downstream 37045 11833344 ~ 11871147 (+)
XLOC_003276 NA coding downstream 43528 11839827 ~ 11876130 (+)
XLOC_003267 BX324177.19 misc upstream 329806 11462306 ~ 11462602 (+)
XLOC_003266 BX324177.20 misc upstream 331306 11460806 ~ 11461102 (+)
XLOC_003265 BX324177.12 misc upstream 341966 11450155 ~ 11450442 (+)
XLOC_003264 BX324177.22 misc upstream 350652 11441460 ~ 11441756 (+)
XLOC_003262 BX324177.15 misc upstream 362719 11429393 ~ 11429689 (+)
XLOC_003281 BX469912.12 misc downstream 366453 12162752 ~ 12163048 (+)
XLOC_003283 BX469912.14 misc downstream 374996 12171295 ~ 12171591 (+)
XLOC_003285 BX469912.9 misc downstream 391007 12187306 ~ 12187602 (+)
XLOC_003286 BX469912.6 misc downstream 393426 12189725 ~ 12190024 (+)
XLOC_003287 BX469912.15 misc downstream 412610 12208909 ~ 12209205 (+)
XLOC_003252 BX324177.5 non-coding upstream 411521 11353459 ~ 11380887 (+)
XLOC_003253 NA non-coding upstream 432693 11359421 ~ 11359715 (+)
XLOC_003241 NA non-coding upstream 1119400 10669135 ~ 10673008 (+)
XLOC_003278 NA non-coding downstream 94941 11891240 ~ 11903510 (+)

Expression


Co-expression Network