G1355443


Basic Information

Item Value
gene id G1355443
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 25011012 ~ 25011482 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1549387
ATGTACAACTTTGCACTTTTTTATCTGAGAAATGTATTTTGcatgtaaaccaatcagggtttaggcctgggcatAGCACTACAGCAACCACTTTAGTTGCTAATTATCTTGTCAATGCTTTAGACACTAAAATGAAATGTGCTGCTTTGTTTGTGGAAAAGCTCtgcttttgatactgttgataATGCTATTTTATTGAACAAGTTGTCCTCGATAGGCCTGGTGAACTTGATTTGTCTTTCATGATTATCTTAGTAACATAAATCAGGCCATCGTTAAGGATGGGGTTAAGTCTGAATTTCTGGAAGTACATAAAGGTGTACCACGGGTCAATTTTGGGACCTGTTGTCTTCTATTTATATAAACACCATTGGTCAATCTGTTAAAAATGTTCAACTTCATCTATATGCTGATGATACTATTATGTATGCTATTGGCCTGATTGTTGATCAAGCTGTGTCAACTAGAGTC

Function

NR:

description
RNA-directed DNA polymerase from mobile element jockey

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1549387 True 471 lncRNA 0.36 1 25011012 25011482

Neighbor

gene id symbol gene type direction distance location
ifn5 cd79b coding upstream 118341 24889101 ~ 24897741 (+)
ccr10 LOC106579362 coding upstream 149882 24857512 ~ 24861130 (+)
LOC110491705 ud2a2 coding upstream 181694 24826163 ~ 24829318 (+)
dcakd dcakd coding upstream 227499 24764607 ~ 24783513 (+)
pus3 pus3 coding upstream 253769 24750108 ~ 24759143 (+)
trnaa-ugc-127 NA coding downstream 19847 25031329 ~ 25031399 (+)
mapta NA coding downstream 34210 25045692 ~ 25092985 (+)
LOC110491714 LOC106579122 coding downstream 153904 25165386 ~ 25191533 (+)
zdhhc6 zdhhc6 coding downstream 190939 25202421 ~ 25213711 (+)
gucy2g LOC106579347 coding downstream 318932 25330414 ~ 25367122 (+)
G1355435 NA non-coding upstream 8399 25001639 ~ 25002613 (+)
G1355394 scn4a non-coding upstream 71948 24938788 ~ 24939064 (+)
G1355377 NA non-coding upstream 109650 24901051 ~ 24901362 (+)
G1355366 NA non-coding upstream 129919 24880828 ~ 24881093 (+)
G1355446 NA non-coding downstream 4736 25016218 ~ 25016540 (+)
G1355449 NA non-coding downstream 12272 25023754 ~ 25024012 (+)
G1355498 NA non-coding downstream 102703 25114185 ~ 25114792 (+)
G1355500 NA non-coding downstream 105108 25116590 ~ 25116821 (+)
G1355503 NA non-coding downstream 107794 25119276 ~ 25119698 (+)
G1355273 NA other upstream 327093 24681414 ~ 24684055 (+)
LOC110491698 LOC106579132 other upstream 329897 24670341 ~ 24681115 (+)
G1354681 rpl19 other upstream 920978 24085708 ~ 24090034 (+)
G1354668 NA other upstream 1015991 23993618 ~ 23995021 (+)
znf281b LOC106578343 other downstream 1065059 26076461 ~ 26107407 (+)
mpp3b LOC106579097 other downstream 1293469 26283071 ~ 26314809 (+)
G1358292 NA other downstream 2317829 27329311 ~ 27332275 (+)
LOC110491768 LOC106579066 other downstream 2549665 27561141 ~ 27595350 (+)
LOC110491776 LOC106579398 other downstream 2891568 27902972 ~ 27986259 (+)

Expression


Co-expression Network