G1355552 (acsl5)


Basic Information

Item Value
gene id G1355552
gene name acsl5
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 25216790 ~ 25226546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1549503
TGCGGATGTACACGTTCTCTATCCTCTCCGGGGCGATGTACTCTCCCTGAGCCAGCTTGAAGATATTCTTCTTGCGGTCAACAATCTTCAAGACTCCACTCGGTAGCCATTTGCCAATGTCTCCGGTGTGTAGCCAGCCATCTTTGTCCAGGGCCTCTGCTGTCTTCTCAGGGTCTTTCAGATATCCGATGAACACGTTTTTACCTTTGATACAGACCTCCCCTTCACCATTGGAAGCAAAGTAGTTCATCTCTTCAACATCAACCAGTTTCACAATGTTACAAGGTATAGGAGCTCCAACATGCCCAGAAGTGGCGTCTCCCGGCATAGTGAAAGAGCAGGCGGCAGTACACTCTGTTTGGCCGTATGCCTCAAAAATCTGACACCCCAGAGATGCCCGCAGGAAGTTGAGAACGGAGGGAGAGATGGGCGCTGCTCCCGTCACCATCACTCGCACACGTCCCC
>TU1549504
TGCGGATGTACACGTTCTCTATCCTCTCCGGGGCGATGTACTCTCCCTGAGCCAGCTTGAAGATATTCTTCTTGCGGTCAACAATCTTCAAGACTCCACTCGGTAGCCATTTGCCAATGTCTCCGGTGTGTAGCCAGCCATCTTTGTCCAGGGCCTCTGCTGTCTTCTCAGGGTCTTTCAGATATCCGATGAACACGTTTTTACCTTTGATACAGACCTGAGAAAATAGAAAAGTATGCATCAGTAAGTGAAGTGTTCTCCTTGTGTTCTGAGTACGGCCGGGGACCATGTGACCTGATCAggccatgtgacctgaccaggaaaaactccagcTCCTAGTTCTAAGGCAGGCAAACCATAGAAACCAATTCATTCAAAAGGTTAAACTAagagagaaaatatatatatgataaaTGAAAGTAAAAGCTGCAAAATGCAAAAATCACTCCACCATTTACTGTatgcaattatttatttttttttgcataaaTTTCATTTGTTTGTGACTGAACAAACaatgtgtagagaatcattgtagaGG
>TU1549505
CTATGTTTTCCATGTTAGACAGTGCCTTTGGTTTGCATCCATCAATGTTCTTTGTAATTAACTCACTAACTGCACTTGtttcctgactccctgcgtctacattacattacagaatcTTGCCTCTCAAAATGGAAGCAGCAGCCAACCGAGACATCTCCCAGATGGTTGACGAACAGGGAGACCTACTTCGCCGGCACCACAATCAGCTAGCGCAACTAGGGAGGGTGGTGGATGAGGTCCTCTAAGAGGCGTCACCCCCAACGAGCGGAGGATCCTCTACCATGAGTCGACCCAGCGAGCCAGCCCATTCAGCAGTCTGCTCTGGTCAGTGATGCCCGTTTTTCCCTTCATGACAAATATGACGAGACTCCATTCAAATATTGTGGCTTCCTTctccagtgctccctctattttGCTCAGCAAACGGGTGCCCCCACTACCGAGTGGTCCAAAGTTGCCAAGGTTATTTCCCTGTTGACAGGGTATGCGTTTGAATCGAATACGGCCATCTGGGAGAGGGGAGAAGCTGGGTTCTTATGGGAGGTTCATGGAGCTGTTCAGAGGAGGCTTCGATTATCCAccggagggcagagagggggggtgagcaCCTACTCCAACTACGGCAGGAGGACCAGACTGTTGCGGAGTTCGCACTCACCTTTCGTACATTGGCAGCATCCAGCAGATGGCATGAGCCGTCGCTCCACACCTTATTCCGAAGAGGATTTGCGTGAGGAGGTCCAGACAAAGCTGGCATGCCGAGACGACACCCTCTCATTGGATGCACTCATCATGATGACCATCCGTCTGGATAACCTCCTTCGGGAGCATTGGCACTCCatcgcctctctccctctttcgttGACGGATATGAGTTTAAGCCTGACCCCTTGGAGGTAGGGGCTACACGCATCCCCTCGGCTGAGTGATGCCGCCGGAAGCAATTGGGGCTCTGTCCCTATTATGGCCAGGAGGGACACCAGCTTCAACGATGTCCGCTACATACTAACCGGTTCCATCAGGTTTCCGTCTTGGGATATGGGATAAGCCCACAGGGAGTGgttatggaggagaggaaggaagatggGTGGTCAGGTCatggccagtcccaaccaccataAAGGGACAACAAAGTTTTTTGGGGGTTGCCAACTTTTATTACCGCTTCATCAGGAACTTTAGCTCCATCGCCTCTCAACTCTCTCCTCAAAGGTGTTCCCCCGTAAGTTGGCGTGGAATCCTGCAGCCGTTGCTGAAACACCCAGACCCCTCGCTGCCCTTTGTGGTGGAGGTGGGCGTGGGGGCCATCCTGTCACAACGTCAAGGTAATCCACAAACTGTATCCATGTGCATGCTACTCTAAACTGTGTTGTcacacagttccatggttagtgcACGCAAGACGCGATACAGCCTACTATTGTACAAAATTTGTATTTAAAAATAATTAAATGTATCTAACAATTTCTGCTGAAAAGATgatgaatatgcatatatttagatggctttctttcattTATCCCTAATATTCTGAGTCTGTCAGCTAAAAGGTGCACTGTATTTAAAGATGGCTTAATATGAATGTACTGAAATTAAAAATCCATGAGAAAATCTGTTTGCCAGAACATAGGAGTGTTGCCAGTGGTTAATTACACTTATTCAGCGCATGCAAGGGATCCACACCTACAAAGCCCATTACGCACCttcataaggtaagtctgaataccaactacagAGAAGTGCATACTGTAGGAAAGGTGCTATTTCCTAAGTCTGAATCAGGACCAAAACAAATAGCATGTGAATAGCACACTATTAGAGTACTCATGGAGAAAAGTGCATAAAAGGGAAATTACAGTACTTTCCATTTACCCTTCACTCCCGTCGGAATCGGGCCCTATGTCAGCCTGCAAAGCCAGTTCTGCTTACAACTAATGACAGTCTTGGGGTCTCGTTTATAATGTCCTTAGACACAATTGTATGATCCAATCTTTGTATGTCCATGTTTTGGTTCATAACCATTGAACTTGAAAATCTGAtttattgtttttaaaaaaaaatgcatttagacatttttgtaactGAAATGTTGTATTAAAAACGGTGTACATTTTATAAATCAAGACACTGTATGACCTTGTACAACTACGACAATCAAATGGCCCTGCTGATGATGATGTAGACCCCAGTATAGAAATAGTGAAATCTTGAATCAGATCTTCAATTCAGATCTGCACTGCCCTTTGTCCTGCTTGTAATAATAGAACAGTTGGGTTTGGAAAGTATAACGATGCTGCAGATGACACACAACCCCAGTAATTCACCCCACTGATTGCTTGTCTGGCTTTGAGATGAATGAACAGGAGAGAGCCGGAAAGCTATTCTACTCGGTCCTGATATTAAACTCCTCTACCACTGTCATGGAAATTGATGTCAGATTGATTGTATGCGGAGATAAATTCAGGTTATTTTATTGTTCCCACGGTTCAGTTTGTATCTACGAGAATCTCACCGGTAGCCATTTGCCAATGTCTCCGGTGTGTAGCCAGCCATCTTTGTCCAGGGCCTCTGCTGTCTTCTCAGGGTCTTTCAGATATCCGATGAACACGTTTTTACCTTTGATACAGACCTCCCCTTCACCATTGGAAGCAAAGTAGTTCATCTCTTCAACATCAACCAGTTTCACAATGTTACAAGGTATAGGAGCTCCAACATGCCCTGAGGAAAGAAACACCTGTTATATAA

Function

symbol description
acsl5 Predicted to enable arachidonate-CoA ligase activity. Predicted to be involved in several processes, including long-chain fatty acid metabolic process; long-chain fatty-acyl-CoA biosynthetic process; and positive regulation of long-chain fatty acid import across plasma membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum; membrane; and mitochondrion. Is expressed in brain; gill; liver; pleuroperitoneal region; and yolk syncytial layer. Orthologous to human ACSL5 (acyl-CoA synthetase long chain family member 5).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1549503 False 465 lncRNA 0.52 5 25216790 25226546
TU1549504 False 541 lncRNA 0.42 2 25216790 25223688
TU1549505 True 2745 lncRNA 0.46 2 25220736 25225239

Neighbor

gene id symbol gene type direction distance location
zdhhc6 zdhhc6 coding upstream 3079 25202421 ~ 25213711 (+)
LOC110491714 LOC106579122 coding upstream 25257 25165386 ~ 25191533 (+)
mapta NA coding upstream 123805 25045692 ~ 25092985 (+)
trnaa-ugc-127 NA coding upstream 185391 25031329 ~ 25031399 (+)
ifn5 cd79b coding upstream 324119 24889101 ~ 24897741 (+)
gucy2g LOC106579347 coding downstream 103868 25330414 ~ 25367122 (+)
plxdc1 LOC106579118 coding downstream 207564 25434110 ~ 25527003 (+)
LOC110491720 lasp1 coding downstream 330721 25557267 ~ 25592916 (+)
arhgap23b LOC106579110 coding downstream 404665 25631211 ~ 25702729 (+)
plcd3b LOC106579107 coding downstream 491762 25718308 ~ 25765325 (+)
G1355527 NA non-coding upstream 58742 25157227 ~ 25158048 (+)
G1355526 NA non-coding upstream 59965 25156589 ~ 25156825 (+)
G1355503 NA non-coding upstream 97092 25119276 ~ 25119698 (+)
G1355500 NA non-coding upstream 99969 25116590 ~ 25116821 (+)
G1355498 NA non-coding upstream 101998 25114185 ~ 25114792 (+)
G1355575 NA non-coding downstream 34687 25261233 ~ 25261451 (+)
G1356094 NA non-coding downstream 64159 25290705 ~ 25290936 (+)
G1356111 NA non-coding downstream 77722 25304268 ~ 25304525 (+)
G1356272 NA non-coding downstream 377699 25604245 ~ 25604577 (+)
G1356395 NA non-coding downstream 557300 25783846 ~ 25784196 (+)
dcakd dcakd other upstream 433278 24764607 ~ 24783513 (+)
G1355273 NA other upstream 532871 24681414 ~ 24684055 (+)
LOC110491698 LOC106579132 other upstream 535675 24670341 ~ 24681115 (+)
G1354681 rpl19 other upstream 1126756 24085708 ~ 24090034 (+)
G1354668 NA other upstream 1221769 23993618 ~ 23995021 (+)
znf281b LOC106578343 other downstream 849995 26076461 ~ 26107407 (+)
mpp3b LOC106579097 other downstream 1078405 26283071 ~ 26314809 (+)
G1358292 NA other downstream 2102765 27329311 ~ 27332275 (+)
LOC110491768 LOC106579066 other downstream 2334601 27561141 ~ 27595350 (+)
LOC110491776 LOC106579398 other downstream 2676504 27902972 ~ 27986259 (+)

Expression


Co-expression Network