G1356094


Basic Information

Item Value
gene id G1356094
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 25290705 ~ 25290936 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1550085
gccatcacctcattttCAGCATGATATTGgatggccccatgttgcaaggatctgtacacaattcctggaagctgaaaatggcccagttcttccatggcctgcacactcaccagacatgtcccccATTGAGTGTGTTTGGGATGCCATTGATCAACGTCTACGACAGCGTGtttcagttcctgccaatatccagcaacttcacacagccattgaagaggagtgggacaacatt

Function

NR:

description
Transposable element Tc3 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1550085 True 232 lncRNA 0.49 1 25290705 25290936

Neighbor

gene id symbol gene type direction distance location
zdhhc6 zdhhc6 coding upstream 76994 25202421 ~ 25213711 (+)
LOC110491714 LOC106579122 coding upstream 99172 25165386 ~ 25191533 (+)
mapta NA coding upstream 197720 25045692 ~ 25092985 (+)
trnaa-ugc-127 NA coding upstream 259306 25031329 ~ 25031399 (+)
ifn5 cd79b coding upstream 398034 24889101 ~ 24897741 (+)
gucy2g LOC106579347 coding downstream 39478 25330414 ~ 25367122 (+)
plxdc1 LOC106579118 coding downstream 143174 25434110 ~ 25527003 (+)
LOC110491720 lasp1 coding downstream 266331 25557267 ~ 25592916 (+)
arhgap23b LOC106579110 coding downstream 340275 25631211 ~ 25702729 (+)
plcd3b LOC106579107 coding downstream 427372 25718308 ~ 25765325 (+)
G1355575 NA non-coding upstream 29254 25261233 ~ 25261451 (+)
G1355552 acsl5 non-coding upstream 64159 25216790 ~ 25226546 (+)
G1355527 NA non-coding upstream 132657 25157227 ~ 25158048 (+)
G1355526 NA non-coding upstream 133880 25156589 ~ 25156825 (+)
G1355503 NA non-coding upstream 171007 25119276 ~ 25119698 (+)
G1356111 NA non-coding downstream 13332 25304268 ~ 25304525 (+)
G1356272 NA non-coding downstream 313309 25604245 ~ 25604577 (+)
G1356395 NA non-coding downstream 492910 25783846 ~ 25784196 (+)
G1356665 LOC106611498 non-coding downstream 496777 25787713 ~ 25787971 (+)
G1356754 NA non-coding downstream 662956 25953892 ~ 25954148 (+)
dcakd dcakd other upstream 507193 24764607 ~ 24783513 (+)
G1355273 NA other upstream 606786 24681414 ~ 24684055 (+)
LOC110491698 LOC106579132 other upstream 609590 24670341 ~ 24681115 (+)
G1354681 rpl19 other upstream 1200671 24085708 ~ 24090034 (+)
G1354668 NA other upstream 1295684 23993618 ~ 23995021 (+)
znf281b LOC106578343 other downstream 785605 26076461 ~ 26107407 (+)
mpp3b LOC106579097 other downstream 1014015 26283071 ~ 26314809 (+)
G1358292 NA other downstream 2038375 27329311 ~ 27332275 (+)
LOC110491768 LOC106579066 other downstream 2270211 27561141 ~ 27595350 (+)
LOC110491776 LOC106579398 other downstream 2612114 27902972 ~ 27986259 (+)

Expression


Co-expression Network