G1356780


Basic Information

Item Value
gene id G1356780
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 26004438 ~ 26069048 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1550849
ttattcagctatgttcaattgtattcttcatactataaaataatataaaataatgccacggaattctaaggaAATCtggtctgctaaatgaactagtaaCTAGTaaggcatagccagatcagggcctaacataaggacaactgaGAGtttgctattctgttcttctgaaatgtcTTTctacatatcatgtttctttagacctatctaatataaataatggatttattgtgatggtgtaagcaattttacatggatttattagacttttaaaaaaatttttttttacatgtaaacTCCCCCTACCGTCccgttttcaggaccctgtctttcaaagataatacctaaaaatccaaataacttcacagatcttcattgtaaagggtttaaacactgtttcccatgcttgttcaatgacccataaacaattaatgaacatgcacctgtggaaaggtcgttaagacacaaacagctttcagacagtaggcaattaaggtcacagttatgaaaacttaggacactaaagaggcctttctactcactctgaaaaacaccaaaagaaagatgctgtgagatgttaccccactcatcCACcaaggacatttctggagggaatggccctagccctaaccttacgATCCAACAGGTCagaaacatgctcaatgggattgagatccaggctcttcgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1550849 True 685 lncRNA 0.37 2 26004438 26069048
Loading

Neighbor

gene id symbol gene type direction distance location
svild LOC106579103 coding upstream 97432 25795973 ~ 25907006 (+)
nmt1b LOC106579105 coding upstream 224192 25774670 ~ 25780246 (+)
plcd3b LOC106579107 coding upstream 239113 25718308 ~ 25765325 (+)
arhgap23b LOC106579110 coding upstream 301709 25631211 ~ 25702729 (+)
LOC110491720 lasp1 coding upstream 411522 25557267 ~ 25592916 (+)
znf281b LOC106578343 coding downstream 7413 26076461 ~ 26107407 (+)
muc13b LOC106579100 coding downstream 63945 26132993 ~ 26166321 (+)
lrp2b LOC106579098 coding downstream 117767 26186815 ~ 26281363 (+)
mpp3b LOC106579097 coding downstream 214023 26283071 ~ 26314809 (+)
ngfrb LOC106579090 coding downstream 425990 26495038 ~ 26577153 (+)
G1356755 NA non-coding upstream 49374 25954835 ~ 25955064 (+)
G1356754 NA non-coding upstream 50290 25953892 ~ 25954148 (+)
G1356665 LOC106611498 non-coding upstream 216467 25787713 ~ 25787971 (+)
G1356395 NA non-coding upstream 220242 25783846 ~ 25784196 (+)
G1356272 NA non-coding upstream 399861 25604245 ~ 25604577 (+)
G1356917 NA non-coding downstream 167518 26236566 ~ 26243680 (+)
G1357249 NA non-coding downstream 213193 26282241 ~ 26282589 (+)
G1357264 NA non-coding downstream 249146 26318194 ~ 26318579 (+)
dcakd dcakd other upstream 1220926 24764607 ~ 24783513 (+)
G1355273 NA other upstream 1320519 24681414 ~ 24684055 (+)
LOC110491698 LOC106579132 other upstream 1323323 24670341 ~ 24681115 (+)
G1354681 rpl19 other upstream 1914404 24085708 ~ 24090034 (+)
G1354668 NA other upstream 2009417 23993618 ~ 23995021 (+)
G1358292 NA other downstream 1260263 27329311 ~ 27332275 (+)
LOC110491768 LOC106579066 other downstream 1492099 27561141 ~ 27595350 (+)
LOC110491776 LOC106579398 other downstream 1834002 27902972 ~ 27986259 (+)

Expression

G1356780 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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G1356780 Expression in each Bioproject

Bar chart with 19 bars.
G1356780 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network