G1358087


Basic Information

Item Value
gene id G1358087
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 27058400 ~ 27060517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1552295
attgttgcatgttgcatttatttttgttcagtgcagttcatatttatttaacaatcccttgaaaacaGCACGTAGGCTTAGCCGTCAATGGTTTTAGCAGAGCTGGGGTTCTCCTTGACCAGAGCAGCCAAATCGAACGCTCTGCACCGTATTGTGACGTTTTATTGATAACAACCTATATGGGTTGCACGCAAGCAGATGACGAAATCTGTCTAGGATAGAATAAATTATATAGTAAAACCTGCAAAAAGAGTGTAAACAGAAAAAaaaaactaATAAACAAAGCAACTTTTTTGGACAACCCTCCCTTATTCCCCTCCCCCCACTGACTAAGCCTATTAAATGGTTTGTGTCATTTTTAAAAGTTGGTTGCCATAAAAGGTGACCCCAGCTGTCATGGCTGTTCATGTCATTGTGACGGTGTTATGTAGGTAGCCCTTTCGACCGAGGCTTGAAGTACAATGTAAAAAGTAGAACCACTTCTTGATATGACCTTTGCACCTCAACAATACAATATCCCCATCTGTACATTACAACAATTCATATACATTTACCTAATCTAGTTTATACACAAAGTGTTTAGGGTTACCTTTAGCAATAAGATCATTTTTTACAATATTTTACAGGCAGAACCAAGGAAGACAAATAGCAAAGCTGTATTGAAGTAGTGGATGAATAAGTTCAATGGAGAAATTTACTGTAATTTGTATTAAATAAAGATGTTTTTCATATCACAATTGTCACTATGTTCAATGGCAAAACTGTAAATGTGAAGataaaaacaattgaataccTGAATAGTTGAATTCAGTCCCGTTTTAAATATAACCATATGATCTGAAACTATGTGATTCAGACATAATGGGGTGTTAAGAGAACAAAGATATTGTAAATTACAATGGCCACTCAACTAATAACTACATACATTATACTGCATTTAAAATGTTAAAAAGAGCGTAAAAGCGGAATcggcagtagaaacaataacaagaGAGACTCCCCCGCCCCCGCTTCGGTCAAAAGCTGAGGGGTTGGGGCTGGAGAAATCTAACCACTCAAATTCGTAGACTGCTATGGTtttaccatgttttgaggctatatggtgtttacatttactttgtttacaaacatgagcttatattttgggttctgatttgGAACGACTTTGAACtaagcatttataagttatattcttcaagaatcaaaatGGGTACACATCATTAAATGTATACGtcccaaaaatggatgtagcaactgctgattctACCAAAAACCACTTTAAAGAAACAGATCCATTCACATGTTAAAGCCTATACACTTATCAAACAACATGCTGAAAAGTCTCAGATTTAAACAAAGTGCCCTGGTAAGTGTGGGTATAATTGTGATGAGTCTTTTGGCTACTCTTGATTTGGGTTCTTGTTTTTCCTTCACAAAACATAAATCTCACAATGAACTGCATCTTATTCAAACATGTCTGTCAAAAAAATAACAGCTTCTGAGAAAATTCTAAATTGAGAGGCAGCCAGAGGGAGTCTTGAGCATTTCCGTAAATTACTCAGGAGGGTGTAAACATTGTCTGTGGGTAACGTTGTCGCCCCCCTTTGAGTGTAAAGGGCATCTATAACATTATCCTGAAATGAAAAGggcaacacatacacaatccagtATCATACAGTTCAGTCCTACATGAACAGGAGTCCCTGTTGACGTCAGATCATAAAAATGAAGTTGCCATGTCCGTTCTTGAGCGGGCCGGAGTTAAACTATCCCTCTATGTTTACCAACTGTATTAAAATAGGACATCGACACTGAGCTCAGATCAGATCAGATTCCAAGGATCACCTCAGACTGTCCCGCTAAGAGCTGAGCCCAGGTTATGTCAGACGCGGAGAATCTCTAGGCAGTTGTTGTAGCAGATTGCGATCCAGTCAGGCTGGGTGGATGCCCACTGGACGTTATTGATCTCGCCTTCGGCCGTGTAGGCCAGGATGGGGTCCTCGATGGCCCTGGGCATCTGCTGGATGTCCCAGATCAGCGCCTGATGGTCATCCG

Function

NR:

description
DDB1- and CUL4-associated factor 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1552295 True 2055 lncRNA 0.39 3 27058400 27060517

Neighbor

gene id symbol gene type direction distance location
LOC110492862 kcnh6 coding upstream 12885 27018092 ~ 27045515 (+)
LOC110492861 LOC106579084 coding upstream 60045 26994629 ~ 26998355 (+)
ngfrb LOC106579090 coding upstream 481247 26495038 ~ 26577153 (+)
mpp3b LOC106579097 coding upstream 743591 26283071 ~ 26314809 (+)
lrp2b LOC106579098 coding upstream 777043 26186815 ~ 26281363 (+)
LOC110492891 NA coding downstream 37752 27098269 ~ 27099220 (+)
LOC110491761 tceb2 coding downstream 272313 27332830 ~ 27359591 (+)
LOC110491760 tgfi1 coding downstream 300036 27360553 ~ 27382020 (+)
patl2 patl2 coding downstream 321762 27382279 ~ 27398868 (+)
cmn LOC106579069 coding downstream 370634 27431151 ~ 27500887 (+)
G1358092 NA non-coding upstream 8530 27049504 ~ 27049870 (+)
G1358091 NA non-coding upstream 10542 27047079 ~ 27047858 (+)
G1357997 NA non-coding upstream 64371 26993197 ~ 26994029 (+)
G1358030 NA non-coding upstream 67098 26991103 ~ 26991302 (+)
G1358025 NA non-coding upstream 75003 26983160 ~ 26983397 (+)
G1358142 NA non-coding downstream 34732 27095249 ~ 27102678 (+)
G1358143 NA non-coding downstream 35330 27095847 ~ 27103103 (+)
G1358189 NA non-coding downstream 94510 27155027 ~ 27155424 (+)
G1358202 NA non-coding downstream 106510 27167027 ~ 27167288 (+)
G1358203 NA non-coding downstream 107529 27168046 ~ 27168390 (+)
znf281b LOC106578343 other upstream 969017 26076461 ~ 26107407 (+)
dcakd dcakd other upstream 2274888 24764607 ~ 24783513 (+)
G1355273 NA other upstream 2374481 24681414 ~ 24684055 (+)
LOC110491698 LOC106579132 other upstream 2377285 24670341 ~ 24681115 (+)
G1358292 NA other downstream 268794 27329311 ~ 27332275 (+)
LOC110491768 LOC106579066 other downstream 500630 27561141 ~ 27595350 (+)
LOC110491776 LOC106579398 other downstream 842533 27902972 ~ 27986259 (+)
G1358698 kif22 other downstream 986165 28046682 ~ 28047390 (+)
G1361207 NA other downstream 2742137 29802654 ~ 29804368 (+)

Expression


Co-expression Network