G1359378


Basic Information

Item Value
gene id G1359378
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 27451209 ~ 27451997 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1553746
CCATATCTGGTACTTTGGGACTCTTTCCTTGAGGCACGGCTGGTGCCACTGGCTTTGGACTTTTTGCCTGTGAGGCTGGCTCTGGTGCTAGTTTAGGGTACGTCTTTCCTTGTGAAACGACAGGTGCTGGCTCAGGGTACGGCATCCCTTGTGGAACCGGCGCTGGCTTCGGACTCTTTGCCTGTGGTACTACAGCTGCTGGCTTTGGGGCTGGCTTCGGGTATGTCTTCCCTTGTGGAACTGGTGCTGCCGCTGGTGCTTTGTTAGGGCACGGCTTTCCTTGTGGAACGACAGGTGCTAGCTTTGGTGCTGGCTTAGCGTATGTCTTTCCTTGTGGAACCGGTGCTGGCTCTGGCGCTGTCTTTGGACTCTTTGCCTGTGGTACTATAGGTACTGGCTTAGTGAAAAGCTTCCCTTGTGGAACTGGTGCTGGCTTAGGGTATGTCTTCCCTTGTGGAAAGATTAGAGCTACACCCTTTGTTGGCTCAGGTACTACAAATCCTGGCTCAGGTGCCGGTGCAAGGTTTAGTGCTTCAGGAGTAAGAACTTCACCTTTGGGGCCCTTTCCATTCGGTGCACCAACACCTTTAGTACCCTGACCATTTGACATGCTGTATCCATTTGGCATGCCGT

Function

NR:

description
extensin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1553746 True 633 lncRNA 0.53 2 27451209 27451997

Neighbor

gene id symbol gene type direction distance location
LOC110491762 NA coding downstream 116638 27320852 ~ 27334571 (-)
pkmyt1 pkmyt1 coding downstream 143329 27297334 ~ 27307880 (-)
LOC110491756 LOC106579074 coding downstream 170650 27266606 ~ 27280559 (-)
LOC110491757 LOC106579075 coding downstream 192234 27254721 ~ 27258975 (-)
mylpfb LOC106579077 coding downstream 196610 27226610 ~ 27254599 (-)
pelo pelo coding upstream 53308 27505305 ~ 27525446 (-)
atp2a1l LOC106579065 coding upstream 194096 27646093 ~ 27661310 (-)
ppp1cab LOC107387951 coding upstream 216850 27668847 ~ 27687988 (-)
LOC118939521 NA coding upstream 238811 27690808 ~ 27692238 (-)
mto1 mto1 coding upstream 275806 27727803 ~ 27755447 (-)
G1359274 NA non-coding downstream 109954 27339050 ~ 27341255 (-)
G1359276 NA non-coding downstream 114771 27334668 ~ 27336438 (-)
G1359243 NA non-coding downstream 252811 27198196 ~ 27198398 (-)
G1359242 NA non-coding downstream 253110 27197751 ~ 27198099 (-)
G1359239 NA non-coding downstream 256278 27194712 ~ 27194931 (-)
G1359406 NA non-coding upstream 48158 27500155 ~ 27500884 (-)
prrt2 LOC106579403 non-coding upstream 550768 28002303 ~ 28012976 (-)
G1359717 pagr1 non-coding upstream 599548 28051545 ~ 28072528 (-)
G1359748 NA non-coding upstream 681400 28133397 ~ 28133627 (-)
G1359771 NA non-coding upstream 724960 28176957 ~ 28177207 (-)
G1359321 NA other downstream 91647 27357284 ~ 27359562 (-)
G1359119 NA other downstream 337808 27111783 ~ 27113401 (-)
LOC110491745 LOC106609103 other downstream 707754 26729304 ~ 26744821 (-)
G1357833 NA other downstream 723381 26727295 ~ 26727828 (-)
LOC110491708 LOC106561205 other downstream 2562565 24884866 ~ 24889077 (-)
G1359412 NA other upstream 75166 27527163 ~ 27528137 (-)
G1359763 NA other upstream 711466 28163463 ~ 28164227 (-)
taok2b LOC106579406 other upstream 725718 28177715 ~ 28237354 (-)
G1361290 NA other upstream 2045116 29497113 ~ 29497555 (-)
G1361619 NA other upstream 2471874 29923871 ~ 29925154 (-)

Expression

G1359378 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.25.
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G1359378 Expression in each Bioproject

Bar chart with 4 bars.
G1359378 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.25.
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Co-expression Network