G1358342


Basic Information

Item Value
gene id G1358342
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 27509618 ~ 27510435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1552570
GGCCCTTAGTAGGGTCATAGCAGGGGTCACCAGCACCAGGTTGGCCAGACCCTCCTGCATCACCACGGCCGCTACGTCTGCCTTCTGGGTGGGGTCACACGCCTGCTCTGAGAGGGCCACAGGAAATAGAATAAGAGTTCAGGTTGCATACAGGCCTAGGTACTCAAAACAGGGTTCGCACTCCGTGGTAAATCTATTTACTTTTCCCCGACTTTCCATGTCTACAGATAATAATTTCCATGTGACAACTTTCACACACATTAGGCAATGCAATGTACATGTTTCTGATCATTTAATGTATAAACTGCGATCCATATGAAACATTCCCTGATTTTCCATAATTGCATCAATGTATTGACTAAATT

Function

NR:

description
protein pelota homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1552570 True 365 lncRNA 0.45 2 27509618 27510435

Neighbor

gene id symbol gene type direction distance location
LOC110492863 paqr4 coding upstream 4984 27501331 ~ 27504634 (+)
cmn LOC106579069 coding upstream 8731 27431151 ~ 27500887 (+)
patl2 patl2 coding upstream 110750 27382279 ~ 27398868 (+)
LOC110491760 tgfi1 coding upstream 127598 27360553 ~ 27382020 (+)
LOC110491761 tceb2 coding upstream 150027 27332830 ~ 27359591 (+)
LOC110491768 LOC106579066 coding downstream 50706 27561141 ~ 27595350 (+)
sult1st6 LOC106579067 coding downstream 84993 27595428 ~ 27646077 (+)
LOC110491774 LOC106579062 coding downstream 192948 27703383 ~ 27727796 (+)
LOC110491775 LOC106579060 coding downstream 265847 27776282 ~ 27823581 (+)
LOC110491776 LOC106579398 coding downstream 392537 27902972 ~ 27986259 (+)
G1358245 NA non-coding upstream 257446 27251269 ~ 27252172 (+)
G1358223 NA non-coding upstream 311372 27198031 ~ 27198246 (+)
G1358221 NA non-coding upstream 314947 27194464 ~ 27194671 (+)
G1358217 NA non-coding upstream 318900 27190482 ~ 27190718 (+)
G1358397 NA non-coding downstream 29125 27539560 ~ 27539829 (+)
G1358398 NA non-coding downstream 31264 27541699 ~ 27541936 (+)
G1358437 NA non-coding downstream 90080 27600515 ~ 27601054 (+)
G1358411 NA non-coding downstream 150294 27660729 ~ 27759730 (+)
G1358412 LOC107387951 non-coding downstream 158414 27668849 ~ 27687905 (+)
G1358292 NA other upstream 177343 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 1194817 26283071 ~ 26314809 (+)
znf281b LOC106578343 other upstream 1420235 26076461 ~ 26107407 (+)
dcakd dcakd other upstream 2726106 24764607 ~ 24783513 (+)
G1355273 NA other upstream 2825699 24681414 ~ 24684055 (+)
G1358698 kif22 other downstream 536247 28046682 ~ 28047390 (+)
G1361207 NA other downstream 2292219 29802654 ~ 29804368 (+)
G1361671 NA other downstream 2433006 29943441 ~ 29943756 (+)

Expression


Co-expression Network