G1358411



Basic Information


Item Value
gene id G1358411
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 27660729 ~ 27759730 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1552653
CCCGCTGCAAGTGTCCCTaaagaagaaaaaataaaacTTCAAAGTGAGGAAAACTTGTGATGTCCTTAACAGATATGATCCTTCCTTCACATATTAAACATCACATCTACTGGTTGTAAATGCCTAACCCAGTGGTCTCTATGCTACAGGGCACACCTCCCGTACTTAGTCTATTCTACCGTCAGATTCCATTTCTTTTCTATGTCCCCCTGTCTTCAtgcacccctccatccctccgtggGTCTCACCATTGGGGCCATACTTGGCCAGGTTCTTCTTGACTTGGTCTGGGGTGAGACCGGTTTCCATGTTCACCCCGAAGAAGGCCAGGCATTCTGCCGGCGTCTTCGTGTGCGCGTTCTCCATCCTTGCTACTAGCAGTGTCTAGGCGTGCTCTTTTGATTTTCGTTGTGTTGCTCCTTTTTCTTTTGTGTGTGGTACTAGGACTTGTATTGGTCCCTTGATTTTGTTCGACCCCTCCACAAGCAGGAAAGGATGGAGG

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1552653 True 502 lncRNA 0.48 2 27660729 27759730

Neighbor


gene id symbol gene type direction distance location
sult1st6 LOC106579067 coding upstream 14652 27595428 ~ 27646077 (+)
LOC110491768 LOC106579066 coding upstream 65379 27561141 ~ 27595350 (+)
LOC110492863 paqr4 coding upstream 156095 27501331 ~ 27504634 (+)
cmn LOC106579069 coding upstream 159842 27431151 ~ 27500887 (+)
patl2 patl2 coding upstream 261861 27382279 ~ 27398868 (+)
LOC110491775 LOC106579060 coding downstream 16552 27776282 ~ 27823581 (+)
LOC110491776 LOC106579398 coding downstream 143242 27902972 ~ 27986259 (+)
pagr1 pagr1 coding downstream 289336 28049066 ~ 28081371 (+)
cabp5a LOC106579440 coding downstream 500553 28260283 ~ 28266022 (+)
nif3l1 nif3l1 coding downstream 518927 28278657 ~ 28287808 (+)
G1358437 NA non-coding upstream 59675 27600515 ~ 27601054 (+)
G1358398 NA non-coding upstream 118793 27541699 ~ 27541936 (+)
G1358397 NA non-coding upstream 120900 27539560 ~ 27539829 (+)
G1358342 NA non-coding upstream 150294 27509618 ~ 27510435 (+)
LOC110491761 tceb2 non-coding upstream 319527 27332830 ~ 27359591 (+)
G1358619 NA non-coding downstream 182646 27942376 ~ 27945256 (+)
G1358656 NA non-coding downstream 242579 28002309 ~ 28004524 (+)
G1358671 NA non-coding downstream 260654 28020384 ~ 28034898 (+)
G1358292 NA other upstream 328454 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 1345928 26283071 ~ 26314809 (+)
znf281b LOC106578343 other upstream 1571346 26076461 ~ 26107407 (+)
dcakd dcakd other upstream 2877217 24764607 ~ 24783513 (+)
G1358698 kif22 other downstream 286952 28046682 ~ 28047390 (+)
G1361207 NA other downstream 2042924 29802654 ~ 29804368 (+)
G1361671 NA other downstream 2183711 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 2943917 30700999 ~ 30704172 (+)

Expression



Co-expression Network