Gene
RNA
| Item | Value |
|---|---|
| gene id | G1358412 |
| gene name | LOC107387951 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 27668849 ~ 27687905 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| serine/threonine-protein phosphatase alpha-2 isoform-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1552657 | True | 2100 | lncRNA | 0.48 | 7 | 27668849 | 27687905 |
27,668,000
27,672,000
27,676,000
27,680,000
27,684,000
27,688,000
27,692,000
27,696,000
27,700,000
27,704,000
27,708,000
NC_048580.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| sult1st6 | LOC106579067 | coding | upstream | 22772 | 27595428 ~ 27646077 (+) |
| LOC110491768 | LOC106579066 | coding | upstream | 73499 | 27561141 ~ 27595350 (+) |
| LOC110492863 | paqr4 | coding | upstream | 164215 | 27501331 ~ 27504634 (+) |
| cmn | LOC106579069 | coding | upstream | 167962 | 27431151 ~ 27500887 (+) |
| patl2 | patl2 | coding | upstream | 269981 | 27382279 ~ 27398868 (+) |
| LOC110491774 | LOC106579062 | coding | downstream | 15478 | 27703383 ~ 27727796 (+) |
| LOC110491775 | LOC106579060 | coding | downstream | 88377 | 27776282 ~ 27823581 (+) |
| LOC110491776 | LOC106579398 | coding | downstream | 215067 | 27902972 ~ 27986259 (+) |
| pagr1 | pagr1 | coding | downstream | 361161 | 28049066 ~ 28081371 (+) |
| cabp5a | LOC106579440 | coding | downstream | 572378 | 28260283 ~ 28266022 (+) |
| G1358437 | NA | non-coding | upstream | 67795 | 27600515 ~ 27601054 (+) |
| G1358398 | NA | non-coding | upstream | 126913 | 27541699 ~ 27541936 (+) |
| G1358397 | NA | non-coding | upstream | 129020 | 27539560 ~ 27539829 (+) |
| G1358342 | NA | non-coding | upstream | 158414 | 27509618 ~ 27510435 (+) |
| LOC110491761 | tceb2 | non-coding | upstream | 327647 | 27332830 ~ 27359591 (+) |
| G1358619 | NA | non-coding | downstream | 254471 | 27942376 ~ 27945256 (+) |
| G1358656 | NA | non-coding | downstream | 314404 | 28002309 ~ 28004524 (+) |
| G1358671 | NA | non-coding | downstream | 332479 | 28020384 ~ 28034898 (+) |
| G1358292 | NA | other | upstream | 336574 | 27329311 ~ 27332275 (+) |
| mpp3b | LOC106579097 | other | upstream | 1354048 | 26283071 ~ 26314809 (+) |
| znf281b | LOC106578343 | other | upstream | 1579466 | 26076461 ~ 26107407 (+) |
| dcakd | dcakd | other | upstream | 2885337 | 24764607 ~ 24783513 (+) |
| G1358698 | kif22 | other | downstream | 358777 | 28046682 ~ 28047390 (+) |
| G1361207 | NA | other | downstream | 2114749 | 29802654 ~ 29804368 (+) |
| G1361671 | NA | other | downstream | 2255536 | 29943441 ~ 29943756 (+) |
| LOC110492869 | LOC106599969 | other | downstream | 3015742 | 30700999 ~ 30704172 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01054599_00000810_00002293 | PPP1CA | coding | CI01054599 | null | 810 ~ 2293 (+) |
| bowfin (Amia calva) | AMCG00012244 | LOC105897688,LOC103034594,LOC101477563,LOC103367324,LOC108280818,LOC105894037 | coding | CM030138.1 | CM030138.1 | 13860050 ~ 13877142 (+) |
