G1358656


Basic Information

Item Value
gene id G1358656
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28002309 ~ 28004524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1552925
TGCAATGTGTCTTTATTAAGAATGTGCCTTGGAAGGATACAAGTATCTCTAGTGCCAGGTTTTCTTATCCATGTGATTTTGGTTGTACTTCTGTAAAATTGTCATACATCAATGAAAATCAACAACATGCCAATATCCACATAGATTATAGTAGCCAATGGTAATACAAAGACTAATAAAGACTAACAAAGACTAGCAGACTACCTCTCCTGTCCACATTACAAGAGCTATAATGTTAACTCATAACTATGAAGACGCCACAATATATACGTTACCTTATCTGCAGAATAATATCAACTTTTGATTACAATTAGTTTTAACATCTAAACACTAACAGAGGGGAAAAATGCCTAATATATTAAATCATACAGAAAATTTGCATTAGGGTAGGAATTGATGTTGATGGACTGAGGTCAAGGCATAGTAGTATCTaaattaaaggtagactcagagGCATGACAGATGCATTAAGTAAACAGCGTAGTGGGTCAATTTCtgcaacaactaagagcgttgaagtgTGAGGCTCAACTTCTCTTCCGTGCACATGTGCATATACTGTGTGTGACCGTGTGAGTGCCTTGCATCTCGCTCATCAATATTTGCGATGCTGCTCATGGCAATGTCATTTCATCTACCTTTAACTTAAAGTTCCAATTTTAAATAATTACCCATCAAAAGTGTTGGGCAACAGAAGTTGTGGGAATGAAAGGTAGATACTAACCAGAAATTTTGCTTGGATTCTAGGGTAGATACATTGTAAAAaacattattatatattttttcatccaTCAATTTATTCACTTAATTGCGGCTTTGATGATTGAAAATTGAGTCAACATTTTAGCCACCGCTAAGCAAAACACTATAAGAGTAACAGGGGCATAATTTGCATGTTTGAATTTTGTGGACAAATCACTTCAAGGAACTTCAAACACGTTACCATCCACAGTTATGAGAGTAAAGTCATACTGTGTATCGATATAAAAATCACTTCAGCTGTGACGGAAACATGACGTGTCGGTCCAATTTGATGAATACCGACAGAATGTTTTTCGTTCGAcgtggtgggatctttttgtgtcggtaaaattaaaTATGCAGTGTTAACACTaggcgcaaatattgatataataaccatcatatcaaagtaaacttggagtcacgtgatgatatggtgtgtggtgctcccactacaactcggggaaaccatgcagtttattaggctatagattaaataaattatgattaacttcacagggtggtgaacgtTCACGGTGATGAGACTCGGTGATGACACTCCTTCCCAATAAATACAGGGTCTTATTCAGacgacatgatgatcgatgcttgactgccgttagAAAAATAAAATATTCTTGCTCTTATCCGTAATAATCTCATGTAGACTTGTCTATTTGTACTGTATCTGAGatctgttggctagagcgcacgtaCCAGAACCAGAGTAGGCACATGAGCTATTAAAAGCAACAGTTTGTGCCAAAACTTTTGGTCGAGTtaaaaaatgcaatggaaacacattgaattaAGATTTAAAAATCAAATTGCGTGCACTACATCGTCACGCACTGGTTTGTATCCGCAGCAATTCGGTTTGGTGggaacacaccactggtggaaaaATATTCAAATTTTCTGTAAACAGATTATGAAAAATCTGTCACCAAATGGATGGAAACCTGGCTACTGATTTCATTCGAGTTGATTTGGCCACAACATTTTTACCATCAACAATGCCCCCTTTTGCTTCCATTGTTTTCTAGTTAGCTGTGGCGATTTAAACAAATCTGAACCCTGCACATAAATGCCTGGATCAATCGACAACACAATTAAGTGAATAAACCAATTAAAATGTCAAGTGAACTGAACCTTCCCTTTAAAGTCCACCACTAGATACTCAGTATGGGGATCAGATACCCACTTGATTAAATCGGAAAGATTACAGATTATATTCTCTGGGTCCCCATACACTTGATACCCAGGGTTCTTACTATATTTCCAGTATCACCAAAGTGAAGACTGGCAATTCAATTTATTGTGACCAGCCATAACAGTGCAGTGACTATGTAATTTGGTATAtgcatatggacacacacacaccacggccATCTATCATGGATAGCTCTGTACTTCAAAAGCATAAGATGATGAAACTTGTGGTTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1552925 True 2190 lncRNA 0.37 2 28002309 28004524

Neighbor

gene id symbol gene type direction distance location
LOC110491776 LOC106579398 coding upstream 16050 27902972 ~ 27986259 (+)
LOC110491775 LOC106579060 coding upstream 178728 27776282 ~ 27823581 (+)
LOC110491774 LOC106579062 coding upstream 274513 27703383 ~ 27727796 (+)
sult1st6 LOC106579067 coding upstream 356232 27595428 ~ 27646077 (+)
LOC110491768 LOC106579066 coding upstream 406959 27561141 ~ 27595350 (+)
pagr1 pagr1 coding downstream 44542 28049066 ~ 28081371 (+)
cabp5a LOC106579440 coding downstream 255759 28260283 ~ 28266022 (+)
nif3l1 nif3l1 coding downstream 274133 28278657 ~ 28287808 (+)
LOC110492866 LOC106521360 coding downstream 574845 28579369 ~ 28607901 (+)
si:ch211-214e3.5 LOC106579413 coding downstream 828840 28833364 ~ 28857801 (+)
G1358619 NA non-coding upstream 57053 27942376 ~ 27945256 (+)
G1358411 NA non-coding upstream 242579 27660729 ~ 27759730 (+)
G1358412 LOC107387951 non-coding upstream 314404 27668849 ~ 27687905 (+)
G1358671 NA non-coding downstream 15860 28020384 ~ 28034898 (+)
G1358725 NA non-coding downstream 98641 28103165 ~ 28127485 (+)
G1358757 NA non-coding downstream 172771 28177295 ~ 28181077 (+)
G1358839 NA non-coding downstream 293745 28298269 ~ 28298893 (+)
G1358944 NA non-coding downstream 469354 28473878 ~ 28474231 (+)
G1358292 NA other upstream 670034 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 1687508 26283071 ~ 26314809 (+)
znf281b LOC106578343 other upstream 1912926 26076461 ~ 26107407 (+)
G1358698 kif22 other downstream 42158 28046682 ~ 28047390 (+)
G1361207 NA other downstream 1798130 29802654 ~ 29804368 (+)
G1361671 NA other downstream 1938917 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 2699123 30700999 ~ 30704172 (+)
G1362902 fgfr2 other downstream 2950085 30954609 ~ 30955975 (+)

Expression


Co-expression Network