G1359717 (pagr1)


Basic Information

Item Value
gene id G1359717
gene name pagr1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28051545 ~ 28072528 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1554121
ctctctatcctccctctccctctcttttgtcGCCTCGTCCTCATCATCCCTCTCGGGCGAGGGGGTCCTCTCAGGTGTAGGCGGTCTTCGAGGAAGGGGCACAAAGTTCAGTTCCAGCTTCTCCCCTTTTGAAAGGAGCTCATACAGTCTTTTGATTTCGTCGGGAGGGGGCATCCAGTTTTTGGGGTCCTCGATTTCATCATCGCTATAGGTGATTTCCCACTCTCGCTCCACCTGCTTTCGATCGCCTCCCTCCAGCTTGTTGTCTgcttccatctccccctcctgCCCCTCTCCTTCCATCGCATCTCCACTTTTGTCTCCTTTTGCATCCTCTGATTTGGTCTCCTCTGCTTTTGCAGCTGCCACATCTGTCCCGTCTTTGTCACCTTCCTCTTCCCTACCAGTGGTTTTCTCAGTGTCCCCCACTACGAGcacctctattccctctctcagTGAGGAGTCTGTTGTAGCCTCTGCAGCCTGCATCATCTTGTTGTTGCTACTATGCTAGAGAGAGAGTTTGCGTTGAGTTACATGTTAGCACCAGTAACAGTAATGTTTACTACAAACCCACTCCTAGTACAGAAGACATGCATATAAAAAAACATGATCTATGTTGAGAATGTGTCTTTCAACACAGCTTATGGAGAAATTTCGGGTCAGAAAAAAAGCTTGGCTATTACACGGACGCTGAACATTTAGCCTGTTATATTCTGTTGATTAACTCTTTTAAAACTGTCTCCATGGCTAAGGTAAGACATGTTACCTTACAAAATGTTGGTTTAAAACTAATCCTTGATGCGGACAAgactaaat

Function

symbol description
pagr1 Predicted to enable estrogen receptor binding activity. Acts upstream of or within brain development. Predicted to be part of MLL3/4 complex. Is expressed in brain. Orthologous to human PAGR1 (PAXIP1 associated glutamate rich protein 1).

NR:

description
PAXIP1-associated glutamate-rich protein 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1554121 True 819 lncRNA 0.47 2 28051545 28072528

Neighbor

gene id symbol gene type direction distance location
kif22 kif22 coding downstream 2680 28013117 ~ 28048865 (-)
prrt2 LOC106579403 coding downstream 38569 28002303 ~ 28012976 (-)
adprh LOC106579059 coding downstream 209090 27826183 ~ 27842455 (-)
mto1 mto1 coding downstream 296098 27727803 ~ 27755447 (-)
LOC118939521 NA coding downstream 359307 27690808 ~ 27692238 (-)
tlcd3bb LOC106579402 coding upstream 9383 28081911 ~ 28128839 (-)
maz maz coding upstream 92819 28165347 ~ 28176911 (-)
taok2b LOC106579406 coding upstream 107717 28177715 ~ 28237354 (-)
eif3c LOC100286610 coding upstream 225725 28298253 ~ 28369344 (-)
si:ch211-180a12.2 LOC106579407 coding upstream 316251 28388779 ~ 28446671 (-)
G1359406 NA non-coding downstream 550661 27500155 ~ 27500884 (-)
G1359378 NA non-coding downstream 599548 27451209 ~ 27451997 (-)
G1359274 NA non-coding downstream 710290 27339050 ~ 27341255 (-)
G1359276 NA non-coding downstream 715107 27334668 ~ 27336438 (-)
G1359748 NA non-coding upstream 60869 28133397 ~ 28133627 (-)
G1359771 NA non-coding upstream 104429 28176957 ~ 28177207 (-)
G1359773 NA non-coding upstream 104744 28177272 ~ 28177556 (-)
G1359812 NA non-coding upstream 202238 28274766 ~ 28313407 (-)
G1359899 NA non-coding upstream 397004 28469532 ~ 28469782 (-)
G1359412 NA other downstream 523408 27527163 ~ 27528137 (-)
G1359321 NA other downstream 691983 27357284 ~ 27359562 (-)
G1359119 NA other downstream 938144 27111783 ~ 27113401 (-)
LOC110491745 LOC106609103 other downstream 1308090 26729304 ~ 26744821 (-)
G1357833 NA other downstream 1323717 26727295 ~ 26727828 (-)
G1359763 NA other upstream 90935 28163463 ~ 28164227 (-)
G1361290 NA other upstream 1424585 29497113 ~ 29497555 (-)
G1361619 NA other upstream 1851343 29923871 ~ 29925154 (-)
G1363836 NA other upstream 3566909 31639437 ~ 31650697 (-)

Expression


Co-expression Network