G1358757


Basic Information

Item Value
gene id G1358757
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28177295 ~ 28181077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1553040
tattacttTGCTTTTACCCTCTTGTTCAACACATTTTAAAGAACCCTATTCTTTTCCCTCAAGCTTGGAATCCCTTGATTGGAATGTTCAACTATGTTTACATATTAACTGAAAATTTCCCCTTTGCAAACCATAAAGTACAAGTCCACACGGAACAGTCCATATCATCATCTAACCAGCTATGTCTGTGACAAAGGAATTGGGATTTCTTCTTCCTGATGTCCATCATGATTTCCTAGACCTTAAGAAATTAAGATAACACCTTttactgcacccccccccccccccccaaatacctATGAATTAGCATGTTATGTTACCAACCATCCATCCACATATCAAAACCCACCAGTCTCTTATTTATATAAAGGAGTTTTCTGCATGCACTGAGATTTCAACCAAGCATGAAGTATTAGGCTACAGGGGGACTTGTCAGAGCTGGTGTTTTTGAGATTGAATAAATAAATCACCCTGTTTGTACAAAGGAACAGCATCTCAGAATCCCTAGTTATAAACAGAGTCTTAGCTAACTGAATGAGGCAAACCCCTTTAATTAAGAAAGGGGAAGTTAAGTATTTGAGTAATATGGCCTTGGTGAGTGTAGGCTTAACTACACAACAAATGGTTGACAACCCTTAACCTTAAAACTTACTTCAACTTGCAGCACAAGCTCACTGACAAGTGGCTCACACCTTGCAATGATGGTTTGCACTGTGAGATTATCATCTAAATTGTGCACCATTCTTTATCTTTGAACTCCATTTTGTTCTTCATGCTAGAATATGTGTGGGCTCAGTAGAATAAATCGTGAAATCTCTAGAAAATTCAACCAACGTTTTCATTTCAAAATCCAACAAACGAACAGAAACATTCCAGAAGAGGTTAATAATGTTCATGTCAACCAATGTTGCTTCTTTTGGATGTGTCACCTTCCTTTTCATTGGGGTCAGACCTTTTATAAAGGTTACACAAGTGTCTTTAAAATGCAATAATGTTTGTTTGTCTAAAAAAGTGGCAATATAACTAGACTGTATACCACTCAAccaacacatgtacacacatgaaTAATCAACAATTATTAATAAAACATTATTAATAATCATTAATACCTGTTACACACACCATACCTGACAATCCAATGTATATctattttttacacattttcaaCCATAGCCCATAGTCAAAAGTGGCATTTTTCTTGCaagataaaaacacatttttgtacAAGATTACAACAACTATATATGGATTAGTAATGGTAATATTGACCTATAGAAAATGCTTTCTTAGTCTAAATCCTGGGTTCAATACTCATTGAATATATCAAAATTACTATGATCATTGTCGTTATTACTCCATAAAACGGATACATTTTtgttttgaaaataaaataaacaagaatagccatttctcaagcaagaattttgctaggactgtctgagtgGGGAAGGGGAAACTTAAAACTAGCAGTTTATGTCAAAGAGGTTTGGAACGCTcattcttattggtctattaactgtctggtgatgtcaccaaaacaaaagctgaaatttcaggcggtcttttttAAACATGTCGTACACTacaagggcattatcataattctCACAATATTATTCAAACCAcggtgtggaaatatatatacactggaaAAAGTGAACGTTAAGCAAGCCTAAATATCTTACATTGAgtgatgtgttttttttcttacTAAGCTAAATTATCTAACATAATTGGCAAATAATTGTGCTTATTTTCACCTTTAAAAAAAGTCTTAATACAAGTAATTTAACTTATTTCAAGGTTTTTTCAAGAAGGTCAAATTATCACTCAATAGAAGATATTTAGGATTGCTTAGATTTCCCTTTTTGCGgtgtaaaacacaggaaaattaAGTTTGACTGCACTGGTCTTTAAATACCAGTGAAACTTGGACAACTAATACTGTACATCTCAAATGTGATTTTGGTCATGTTTacaaatgttttgtacatttatgTAATGCGTTGGAGCGACTCCCATGGACACCTGTGTCATTTTTAAAGATAATAAATGCACTACAtcaccaaaagtatatggacacctgcttattgaacatctccttccaaaatcatgggcattaatatagagttggtcccccctttgctgctataacagcctccactcgtctgggaaggatttccactagatgttggaacattgctgctgggacttgcttacattcagccacaagagcattagtgatgttgggcaattaggcctggttctcagtcggcattccaattcatcccaaaggtgtttgatggggttgaggttagggctctgtgcaggccagtcatgttctaaacacactgatctcgacaaaccatttctgtatggatctcgctttgtgcatggggccattgtcacgctgaaacgagaaagggccttccccaaactgttgccacaaagttggaggcacagaatagtctagaatgtcattgtatgctgtagcgttaagatatcCGTTCACtggccccagaccattattcctcctccaccaaactgtacagttggcactatgcattgggacaggtagcattctcctggtatccgccctgccagatggtgaagagtgattcatcactccatagaacgcgtttccactgctccagagtccaatggcggcgagctttacaccactccagccgccGCTTGGCAttgtgatcttaagcttgtgtgaggctgttcggccatggaaacccatttcatgaatctcctgacgaacagttcttgtgctgaagttgtttccagaggcagtttggaacttggtagtgagtgttgcaaccgaggacagacgatttttacacactacgtgcttcagcactcagcgttcccgttctgtgagcttgtatggcctaccacttcacggctgagctgttcttgctcctagatgtttccacttcacaataacagcacttacagttaaccgggggagctctagcaggacagaaatttgacaaactgacttgttggaaatagccgaattcactcatttgaagggttgtccacatacttttgtatatatagtgtatgtcatGGATGACAGAAAAGTTTTTGAGGTCATTTTGTTGTCCATACAaatgtctctctccattccagGTGCTTTCATTATTTTTAATGAAACCGGGTCTGTTTGTTGCCTTTATAAACATTCTGTGTATTCATATTAATTTACATCAGCTGTAATTCTTGCGTGGTCATCACACCATCCCTTTAAGACTTCTTAAAGGCCTTGGTGACGTCCCGAGCCACTTGTTTTAAACACATCtacaaaataaactaaaacaCTATCAACAAATAAGTTATAAACCAATAAAATGTGTTTCGAACAATAGCTACCTTTCTGAATGCAGACTAAAACCAGCATTTTTTATTGTTCCCCATGTCTTCCCTTTCTGAAGCCATACAACACAAGTGTTTGCTAGATTATCAGGACACCACACACAACATACATACATTCACTTTTAGGTCTGTTGTCTTTATCTCTTCCCTTTCCATGCACTTTCCCACCTATTCTCTCGCTTCCTCCATTCCATTATAGAACATCATAGAAGAAGACATGGCTACCTTGAAGAGCAACCCTCAAACTGATACCTACCCTTCCCCTGCCTCACCTCAGAAAAAAAGTCAGACACCCTCTCCGCATCCTTTTCCCTCACCCACTTCAATGGTAAGACAGGTAGCTACATTCCCCCATCCCCGTCTACTCCCtacctcctgctctctctcggGTGAACACCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1553040 True 3783 lncRNA 0.39 1 28177295 28181077

Neighbor

gene id symbol gene type direction distance location
pagr1 pagr1 coding upstream 95924 28049066 ~ 28081371 (+)
LOC110491776 LOC106579398 coding upstream 191036 27902972 ~ 27986259 (+)
LOC110491775 LOC106579060 coding upstream 353714 27776282 ~ 27823581 (+)
LOC110491774 LOC106579062 coding upstream 449499 27703383 ~ 27727796 (+)
sult1st6 LOC106579067 coding upstream 531218 27595428 ~ 27646077 (+)
cabp5a LOC106579440 coding downstream 79206 28260283 ~ 28266022 (+)
nif3l1 nif3l1 coding downstream 97580 28278657 ~ 28287808 (+)
LOC110492866 LOC106521360 coding downstream 398292 28579369 ~ 28607901 (+)
si:ch211-214e3.5 LOC106579413 coding downstream 652287 28833364 ~ 28857801 (+)
nrg3b LOC106579414 coding downstream 743740 28924817 ~ 29353460 (+)
G1358725 NA non-coding upstream 49810 28103165 ~ 28127485 (+)
G1358671 NA non-coding upstream 142397 28020384 ~ 28034898 (+)
G1358656 NA non-coding upstream 172771 28002309 ~ 28004524 (+)
G1358619 NA non-coding upstream 232039 27942376 ~ 27945256 (+)
G1358839 NA non-coding downstream 117192 28298269 ~ 28298893 (+)
G1358944 NA non-coding downstream 292801 28473878 ~ 28474231 (+)
G1358943 NA non-coding downstream 293817 28474894 ~ 28478300 (+)
G1358945 NA non-coding downstream 354241 28535318 ~ 28540660 (+)
G1358960 NA non-coding downstream 362854 28543931 ~ 28544138 (+)
G1358698 kif22 other upstream 129905 28046682 ~ 28047390 (+)
LOC110491768 LOC106579066 other upstream 600203 27561141 ~ 27595350 (+)
G1358292 NA other upstream 845020 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 1862494 26283071 ~ 26314809 (+)
G1361207 NA other downstream 1621577 29802654 ~ 29804368 (+)
G1361671 NA other downstream 1762364 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 2522570 30700999 ~ 30704172 (+)
G1362902 fgfr2 other downstream 2773532 30954609 ~ 30955975 (+)
G1363401 NA other downstream 3053416 31234493 ~ 31235386 (+)

Expression


Co-expression Network