Gene
RNA
| Item | Value |
|---|---|
| gene id | G1358839 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 28298269 ~ 28298893 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Eukaryotic translation initiation factor 3 subunit C |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1553141 | True | 511 | lncRNA | 0.46 | 2 | 28298269 | 28298893 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nif3l1 | nif3l1 | coding | upstream | 10461 | 28278657 ~ 28287808 (+) |
| cabp5a | LOC106579440 | coding | upstream | 32247 | 28260283 ~ 28266022 (+) |
| pagr1 | pagr1 | coding | upstream | 216898 | 28049066 ~ 28081371 (+) |
| LOC110491776 | LOC106579398 | coding | upstream | 312010 | 27902972 ~ 27986259 (+) |
| LOC110491775 | LOC106579060 | coding | upstream | 474688 | 27776282 ~ 27823581 (+) |
| LOC110492866 | LOC106521360 | coding | downstream | 280476 | 28579369 ~ 28607901 (+) |
| si:ch211-214e3.5 | LOC106579413 | coding | downstream | 534471 | 28833364 ~ 28857801 (+) |
| nrg3b | LOC106579414 | coding | downstream | 625924 | 28924817 ~ 29353460 (+) |
| LOC110491795 | LOC106579416 | coding | downstream | 1125448 | 29424341 ~ 29480114 (+) |
| irf3 | irf-3 | coding | downstream | 1182751 | 29481644 ~ 29492902 (+) |
| G1358757 | NA | non-coding | upstream | 117192 | 28177295 ~ 28181077 (+) |
| G1358725 | NA | non-coding | upstream | 170784 | 28103165 ~ 28127485 (+) |
| G1358671 | NA | non-coding | upstream | 263371 | 28020384 ~ 28034898 (+) |
| G1358656 | NA | non-coding | upstream | 293745 | 28002309 ~ 28004524 (+) |
| G1358944 | NA | non-coding | downstream | 174985 | 28473878 ~ 28474231 (+) |
| G1358943 | NA | non-coding | downstream | 176001 | 28474894 ~ 28478300 (+) |
| G1358945 | NA | non-coding | downstream | 236425 | 28535318 ~ 28540660 (+) |
| G1358960 | NA | non-coding | downstream | 245038 | 28543931 ~ 28544138 (+) |
| G1358962 | NA | non-coding | downstream | 248783 | 28547676 ~ 28547950 (+) |
| G1358698 | kif22 | other | upstream | 250879 | 28046682 ~ 28047390 (+) |
| LOC110491768 | LOC106579066 | other | upstream | 721177 | 27561141 ~ 27595350 (+) |
| G1358292 | NA | other | upstream | 965994 | 27329311 ~ 27332275 (+) |
| mpp3b | LOC106579097 | other | upstream | 1983468 | 26283071 ~ 26314809 (+) |
| G1361207 | NA | other | downstream | 1503761 | 29802654 ~ 29804368 (+) |
| G1361671 | NA | other | downstream | 1644548 | 29943441 ~ 29943756 (+) |
| LOC110492869 | LOC106599969 | other | downstream | 2404754 | 30700999 ~ 30704172 (+) |
| G1362902 | fgfr2 | other | downstream | 2655716 | 30954609 ~ 30955975 (+) |
| G1363401 | NA | other | downstream | 2935600 | 31234493 ~ 31235386 (+) |
