G1358943


Basic Information

Item Value
gene id G1358943
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28474894 ~ 28478300 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1553260
agatttcctcctcttcgtctgaagaggagtaaggatcggaccaagatgcggcgtggtaagtgttcatgtcgtttattttaaaaacataaactgaacactaagaatacaaaaacaataaacgatgacgtgaataaccaaaccgaaacagtaccgtgtggcgacaaacacagacacggaaacaaacacccacaaaccaacagtgaaacccaggctacctaagtatgaccgagagactgaaaaacagcttctatctcaaggccatcagactgttaaacagccaccactatctagaagaaaaataaacgcacacctattaagacaAGGTGCTGGCCAGCGGAGtggaaacttgaaaataaaagagagccagccgcacactcttggagctcagatgcaaaaatgttataccaacgtttcgacagccaagctgtcttcatcagggtataatcacaaacactgcgggatgagtcgtttatatagtgtcaaaagacacaggtgtctgtaatcatggccaggagtggcttaatatcattggttaataatcaaatattaaaaagTCATaaaaagaacagcatacaaacaaatggatagcatacgatcatagattaatttgactaTACAAGTTTACACACAATTACagtggcaaagtcacaataatcacaagaatggcttcagatcaaagtctacgttgagaccgaagggcgcaagggtctttaaattaaagatccaggcagcctctcgttttaacaataaattatcaaggtcaccccctctcctagggagggtgacatgttcgatgccaatataacgcagagacgaaatcgagtggcctgcctccaagaagtgggccgcaactggataagtaaagtttttacacctaatggtgctacgatgctctgaaatacgtacttttaattcgcgctttgttttacctacataatttttaccacaaggacaagttataagataaataactgccttagtggagcacgtaataacaccttttattgggatcgatttagacgttgttcaggaatatcttggggtggtaaatcagagtttaccaattggtctctgagatttctgccccgcgagaatacgaccaagggaaggtccgaaaacacattaccgagactatcatcggattttaggatgtgccaatgtttgtgaacagagcactttgaatagcgggtagttagaacacaagaatgcgtctttttgcgagactgaccttgaaaaaggtcatgtctcgttttgttttgaattttctcaatggcaatattaatctgatcattcttgtagcccctctccttgaactttctttgcgtctcagccatatttctgtcgaaatcggactgttttttgcaaattcttttgattcgacagaattggctgtagggcaaactattttcaactaacattgagtggctgccgccaacacactgacactgacactgactcaactccagccactttaataatgggaattgatgggaaatgatgtaaatatatcactagccactttaaacaatgctaccttatataatgttacttaccctacattattcatctcatatgcatacgtatatactgtactctatatcatcgactgcatccttatgtaatacatgtatcactagccactttaactatgccactttgtttacatactcacctcatgtatatactgtactcgataccatctactgtatcctgcctatgctgctctgtaccatcactcattcatatatccttatgtacatattctttatccccttacactgtttataagacagtagttttggaattgttagttagattacttgttggttattactgcattgtcggaactagaagcacaagcatttcgctaaactcgcattaacatctgctaaccatgtgtatgtgacaaatacaatttgatttgatttgatttgattctcagagacaactaactcctgcctctgattgagaaccatactaggccgaaacagaaacacaaacatagaaacacaaaacatagactgcccaccccaactcacaccctgaccatactaaataaagacaaaacaaaggaaaataaaggtcagaacgtgacacttaaATAtcaaatggaggacgcttttccccgtggtttattttcatgccagccaggtaggctatactcctgttgtaaatataagcaatgtgcttaatattaggaaagttgagaaataaatatagtaggcctagcctatagaaagctgatggaatCCTCGTCTTTTTATTAGCggccaatgacccaacacacctccaggctgcgtaagggctatttgactaagaaggagagtgatggagtgctgcatcagatgacctggcctccacaatcacctgacctcaactaaATTGAGATGAGTTAgcccacagagtgaaggaaaagcaaccaacatgTGCTAAGcatccttcaagacggttggaaaagcattccaggtgagggtggttgagagaatgccaagagtgtgcaaagctgtcaaaggcaaagggtggctcctttAAAGAAtcaaaaatgcaaaaaaaaattttgggggtactacatgattctatcATGATTCTACAAATTTCCATTggtcaaatgtccattgctcgtgtttcgtggcccaagcaagtctcttcttcttattgttgtccgttagtagtggtttctttgcagcaattcaaccatgaatgcttgattcacgcagtctactctgaacagttgatgttgagatgtgtctgttattgaactctgcaatttctgaggctgataactctaatgaacttatcctctgcagccgaggtaactctgggtattccattcctgtggctgtcctcataaaagcaagtttcatcatagggctcaatgtttttgtgactgcactttcttgaaatgttccgtattgactgaccttcatgtctaaaagtaatgatggattgttgtTTCACcttccttatttgagctgtttttgccatactatggtcttttaccaaatagggcaatcttctgtatacccccctaccttgtcacaacacaactgatgggctcaaactctttaagaaggaaagaaattccacaaattcactttaaagaaggcacacctgttaatggaaatgcattccaggtgactttttcatgaagctggttgagataatgccaagagtgtggaaagctgtcatcaaggcatagggtggccatttgaagaatctcaaatataaattatattttgattcgtttaacacttttttggttactacatgattccatatgtgttatttca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1553260 True 3290 lncRNA 0.40 3 28474894 28478300

Neighbor

gene id symbol gene type direction distance location
nif3l1 nif3l1 coding upstream 187086 28278657 ~ 28287808 (+)
cabp5a LOC106579440 coding upstream 208872 28260283 ~ 28266022 (+)
pagr1 pagr1 coding upstream 393523 28049066 ~ 28081371 (+)
LOC110491776 LOC106579398 coding upstream 488635 27902972 ~ 27986259 (+)
LOC110491775 LOC106579060 coding upstream 651313 27776282 ~ 27823581 (+)
LOC110492866 LOC106521360 coding downstream 101069 28579369 ~ 28607901 (+)
si:ch211-214e3.5 LOC106579413 coding downstream 355064 28833364 ~ 28857801 (+)
nrg3b LOC106579414 coding downstream 446517 28924817 ~ 29353460 (+)
LOC110491795 LOC106579416 coding downstream 946041 29424341 ~ 29480114 (+)
irf3 irf-3 coding downstream 1003344 29481644 ~ 29492902 (+)
G1358944 NA non-coding upstream 663 28473878 ~ 28474231 (+)
G1358839 NA non-coding upstream 176001 28298269 ~ 28298893 (+)
G1358757 NA non-coding upstream 293817 28177295 ~ 28181077 (+)
G1358725 NA non-coding upstream 347409 28103165 ~ 28127485 (+)
G1358671 NA non-coding upstream 439996 28020384 ~ 28034898 (+)
G1358945 NA non-coding downstream 57018 28535318 ~ 28540660 (+)
G1358960 NA non-coding downstream 65631 28543931 ~ 28544138 (+)
G1358962 NA non-coding downstream 69376 28547676 ~ 28547950 (+)
G1358972 NA non-coding downstream 86454 28564754 ~ 28565259 (+)
G1358973 NA non-coding downstream 88896 28567196 ~ 28567770 (+)
G1358698 kif22 other upstream 427504 28046682 ~ 28047390 (+)
LOC110491768 LOC106579066 other upstream 897802 27561141 ~ 27595350 (+)
G1358292 NA other upstream 1142619 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 2160093 26283071 ~ 26314809 (+)
G1361207 NA other downstream 1324354 29802654 ~ 29804368 (+)
G1361671 NA other downstream 1465141 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 2225347 30700999 ~ 30704172 (+)
G1362902 fgfr2 other downstream 2476309 30954609 ~ 30955975 (+)
G1363401 NA other downstream 2756193 31234493 ~ 31235386 (+)

Expression


Co-expression Network