G1358945


Basic Information

Item Value
gene id G1358945
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28535318 ~ 28540660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1553263
ATTGTGGATACATACTTTATTCCATGGCTCCATTACAAACATTATACTGAGTTAGGTGTTACAGACCCAGGAATAATATTACATGTTTTGTAAAAACACAACGATGGGAATCTCTTCACCTTAAAAAAGGTGTGAAATGGtagggagagggaatggaggcagaacacattttttttgtaatcTTCTCTCTGAAGCAAGAGCCCAAAGAAAGGTttccgtttctctctctttctccgtgcTGAGGTACCAAACGAGTAATGTTGCAGAGGGTCGAGTAGAGACGGCTTCTTAGGAGGTGCCGAATAAGACATGGCACTCCCCATGTGGGGGAGGGTGGCGGGTACAGGGAGATGGTGTGAGGGTTAGGAGAGGGATGCTGGTAAAGTGTCCATGCCTAATAAGCGTGGTTGGCCACGAACAGTGATTCTCCAGCGGCGGTGCTGTCTCCGGACGCGACATACTTGCCTTGGCAGGCCAGGCTGTTGGCCAGCTCTCTTGATGAACTCCTCCTGGGCAGCCTTTCCGTTCGCAGGTTTGCCACCCCATGCCTTCAGGGCGGATGCCTGGAGGGCACGGCCATAGGAAAAAGTCAATGCCCATGGCCTGTGCAGGGGACACTGGTTCATGACGTTCAGGTTGATGGATGCCTCCTCCTCAGACTGGCCACCGGACAGGAAGGTGACGCCTGAACTGCTGGGGGCACGGTGCGGCGCAGGGCCGTGACGGTGGCCATGGCGATCTCCTGGTGGGTATACTTGTGTGAGCAGGAGTGTCCGGCAGTGACCATGTTGGGCTTCAGGAGGGTACCCTCCAGGTAGACATGGTGGTCGGACAGAGCCTTGTACATTGCGGCCAGGACCTTCTCAGTCACGTACTGGGTGCGCTTCAGGTCGTGGTCACCATCGGGGAGGATCTCGGGCTCAACAATGGGGACAATGCCGTGCCTGGCAGATACTGGCATAACGAGCCAAGACATTGCAATTCTCCATGATGGCCAGGCGGGAGGGGGTGGTGGAGGTGATCTTCAGCACACAACGCCACTTGGCGAAGTCACAACCGTCCTTCTTGTACTGGGCGCAACGCTCATACAGGCCATCCAGACCTGAGTGGTGGTCTCTCCATTGGTTCCAGCAAGGGGGACAACACCTTTGTCAACCTTGATGCCTACAACCCAGCCTCTGGACTTGACGTGCTCGGGGAAGGTCTTGCCGGCATCGGTCTTCTGGTACAGGGTCTCGTGGAAGAAGATGACGCCACCAATGCAAGGACCGGCACGGTCGTCAGCGGTGAAGAGGAGCTGACGGTACAGCCTCCTGTTCTCTTCAGTGTTCTCAGCATTGATGCTCTGGAAGCGCTTGGCAACGCTGCCTGTTGGGGGGGAAAAAGCGATAGGGAATGAAGGTTAGACTCAC
>TU1553264
ATTGTGGATACATACTTTATTCCATGGCTCCATTACAAACATTATACTGAGTTAGGTGTTACAGACCCAGGAATAATATTACATGTTTTGTAAAAACACAACGATGGGAATCTCTTCACCTTAAAAAAGGTGTGAAATGGtagggagagggaatggaggcagaacacattttttttgtaatcTTCTCTCTGAAGCAAGAGCCCAAAGAAAGGTttccgtttctctctctttctccgtgcTGAGGTACCAAACGAGTAATGTTGCAGAGGGTCGAGTAGAGACGGCTTCTTAGGAGGTGCCGAATAAGACATGGCACTCCCCATGTGGGGGAGGGTGGCGGGTACAGGGAGATGGTGTGAGGGTTAGGAGAGGGATGCTGGTAAAGTGTCCATGCCTAATAAGCGTGGTTGGCCACGAACAGTGATTCTCCAGCGGCGGTGCTGTCTCCGGACGCGACATACTTGCCTTGGCAGGCCAGGCTGTTGGCCAGCTCTCTTGATGAACTCCTCCTGGGCAGCCTTTCCGTTCGCAGGTTTGCCACCCCATGCCTTCAGGGCGGATGCCTGGAGGGCACGGCCATAGGAAAAAGTCAATGCCCATGGCCTGTGCAGGGGACACTGGTTCATGACGTTCAGGTTGATGGATGCCTCCTCCTCAGACTGGCCACCGGACAGGAAGGTGACGCCTGTGGGTgaagaggggaagaagagaggttatttttttgtaaaaacCTACCTAAAGAAGATACAACACATTGTATATGAAATATACACAATAATAAATTATATAATATTgtaactacatactgtatgtgaaagTGCCATATCCATGGAGAGTGAGTTTGTGTTTGTGAAAATGTGTCATAACATCGAGTGTGAGAGGGTGAAGGTGGATGTTTAGAAATGTATATGTGTATCGTGCTGTATATTGTGCTGTATTCAGTGTGTTGTCGGCCGCTCACCAGGAACTGCTGGGGGCACGGTGCGGCGCAGGGCCGTGACGGTGGCCATGGCGATCTCCTGGTGGGTATACTTGTGTGAGCAGGAGTGTCCGGCAGTGACCATGTTGGGCTTCAGGAGGGTACCCTCCAGGTAGACATGGTGGTCGGACAGAGCCTTGTACATTGCGGCCAGGACCTTCTCAGTCACGTACTGGGTGCGCTTCAGGTCGTGGTCACCATCGGGGAGGATCTCGGGCTCAACAATGGGGACAATGCCGTGATCTGGCAGATACTGGCATAACGAGCCAAGACATTGCAATTCTCCATGATGGCCAGGCGGGAGGGGGTGGTGGAGGTGATCTTCAGCACACAACGCCACTTGGCGAAGTCACAACCGTCCTTCTTGTACTGGGCGCAACGCTCATACAGGCCATCCAGACCTGATGGAGAAATGGATTGAGATTTGGGAGCCTGAGTGGTGGTCTCTCCATTGGTTCCAGCAAGGGGGACAACACCTTTGTCAACCTTGATGCCTACAACCCAGCCTCTGGACTTGACGTGCTCGGGGAAGGTCTTGCCGGCATCGGTCTTCTGGTACAGGGTCTCGTGGAAGAAGATGACGCCACCAATGCAAGGACCGGCACGGTCGTCAGCGGTGAAGAGGAGCTGACGGTACAGCCTCCTGTTCTCTTCAGTGTTCTCAGCATTGATGCTCTGGAAGCGCTTGGCAACGCTGCGGTAGACTCGTCAGCGGCGAGGATTCCCTTGCCCTTGGCGACAATCTTGAGAGCGATGTCACTGAGCTCCTTCTTCTGATCAGGAGTGAGGAAGGGGAATGAGTGAGGCATTTTGACTCTTATCTTGGAGGGTTGGAGGAGAgctgggagaagagaggggagaagatcCGACTAAAGTTCGCGACAACCTCCTGGTCCGCCTGGGACACTTTTTATCCTCCTATTGTGACCCCTCACATTTCAGCCGCCGGCTAAAAAAAGAATGGCAAGCAACCGGAGAAGGCC
>TU1553265
ATTGTGGATACATACTTTATTCCATGGCTCCATTACAAACATTATACTGAGTTAGGTGTTACAGACCCAGGAATAATATTACATGTTTTGTAAAAACACAACGATGGGAATCTCTTCACCTTAAAAAAGGTGTGAAATGGtagggagagggaatggaggcagaacacattttttttgtaatcTTCTCTCTGAAGCAAGAGCCCAAAGAAAGGTttccgtttctctctctttctccgtgcTGAGGTACCAAACGAGTAATGTTGCAGAGGGTCGAGTAGAGACGGCTTCTTAGGAGGTGCCGAATAAGACATGGCACTCCCCATGTGGGGGAGGGTGGCGGGTACAGGGAGATGGTGTGAGGGTTAGGAGAGGGATGCTGGTAAAGTGTCCATGCCTAATAAGCGTGGTTGGCCACGAACAGTGATTCTCCAGCGGCGGTGCTGTCTCCGGACGCGACATACTTGCCTTGGCAGGCCAGGCTGTTGGCCTAGCTCTCTTGATGAACTCCTCCTGGGCAGCCTTTCCGTTCGCAGGTTTGCCACCCCATGCCTTCAGGGCGGATGCCTGGAGGGCACGGCCATAGGAAAAAGTCAATGCCCATGGCCTGTGCAGGGGACACTGGTTCATGACGTTCAGGTTGATGGATGCCTCCTCCTCAGACTGGCCACCGGACAGGAAGGTGACGCCTGAACTGCTGGGGGCACGGTGCGGCGCAGGGCCGTGACGGTGGCCATGGCGATCTCCTGGTGGGTATACTTGTGTGAGCAGGAGTGTCCGGCAGTGACCATGTTGGGCTTCAGGAGGGTACCCTCCAGGTAGACATGGTGGTCGGACAGAGCCTTGTACATTGCGGCCAGGACCTTCTCAGTCACGTACTGGGTGCGCTTCAGGTCGTGGTCACCATCGGGGAGGATCTCGGGCTCAACAATGGGGACAATGCCGTGATCTGGCAGATACTGGCATAACGAGCCAAGACATTGCAATTCTCCATGATGGCCAGGCGGGAGGGGGTGGTGGAGGTGATCTTCAGCACACAACGCCACTTGGCGAAGTCACAACCGTCCTTCTTGTACTGGGCGCAACGCTCATACAGGCCATCCAGACCTGAGTGGTGGTCTCTCCATTGGTTCCAGCAAGGGGGACAACACCTTTGTCAACCTTGATGCCTACAACCCAGCCTCTGGACTTGACGTGCTCGGGGAAGGTCTTGCCGGCATCGGTCTTCTGGTACAGGGTCTCGTGGAAGAAGATGACGCCACCAATGCAAGGACCGGCACGGTCGTCAGCGGTGAAGAGGAGCTGACGGTACAGCCTCCTGTTCTCTTCAGTGTTCTCAGCATTGATGCTCTGGAAGCGCTTGGCAACGCTGCGGTAGACTCGTCAGCGGCGAGGATTCCCTTGCCCTTGGCGACAATCTTGAGAGCGATGTCACTGAGCTCCTTCTTCTGATCAGGAGTGAGGAAGGGGAATGAGTGAGGCATTTTGACTCTTGAGGGTTGGAGGAGAgctgggagaagagaggggagaagatcCGACTAAAGTTCGCGACAACCTCCTGGTCCGCCTGGGACACTTTTTATCCTCCTATTGTGACCCCTCACATTTCAGCCGCCGGCTAAAAAAAGAATGGCAAGCAACCGGAGAAGGCC
>TU1553271
TTGCGTACCGGTAGACTCGTCAGCGGCGAGGATTCCCTTGCCCTTGGCGACAATCTTGAGAGCGATGTCACTGAGCTCCTTCTTCTGATCAGGAGTGAGGAAGGGGAATGAGTGAGGCATTTTGACTCTTATCTTGGAGGGTTGGAGGAGAgctgggagaagagaggggagaagatcCGACTAAAGTTCGCGACAACCTCCTGGTCCGCCTGGGACACTTTTTATCCTCCTATTGTGACCCCTCACATTTCAGCCGCCGGCTAAAAAAAGAATGGCAAGCAACCGGAGAAGGCC

Function

NR:

description
aldolase a, fructose-bisphosphate 1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1553263 False 1412 lncRNA 0.55 5 28535318 28538683
TU1553264 False 1962 lncRNA 0.52 7 28535318 28540660
TU1553265 False 1649 lncRNA 0.55 7 28535318 28540660
TU1553271 True 294 lncRNA 0.53 2 28539052 28540660

Neighbor

gene id symbol gene type direction distance location
nif3l1 nif3l1 coding upstream 247510 28278657 ~ 28287808 (+)
cabp5a LOC106579440 coding upstream 269296 28260283 ~ 28266022 (+)
pagr1 pagr1 coding upstream 453947 28049066 ~ 28081371 (+)
LOC110491776 LOC106579398 coding upstream 549059 27902972 ~ 27986259 (+)
LOC110491775 LOC106579060 coding upstream 711737 27776282 ~ 27823581 (+)
LOC110492866 LOC106521360 coding downstream 38709 28579369 ~ 28607901 (+)
si:ch211-214e3.5 LOC106579413 coding downstream 292704 28833364 ~ 28857801 (+)
nrg3b LOC106579414 coding downstream 384157 28924817 ~ 29353460 (+)
LOC110491795 LOC106579416 coding downstream 883681 29424341 ~ 29480114 (+)
irf3 irf-3 coding downstream 940984 29481644 ~ 29492902 (+)
G1358943 NA non-coding upstream 57018 28474894 ~ 28478300 (+)
G1358944 NA non-coding upstream 61087 28473878 ~ 28474231 (+)
G1358839 NA non-coding upstream 236425 28298269 ~ 28298893 (+)
G1358757 NA non-coding upstream 354241 28177295 ~ 28181077 (+)
G1358725 NA non-coding upstream 407833 28103165 ~ 28127485 (+)
G1358960 NA non-coding downstream 3271 28543931 ~ 28544138 (+)
G1358962 NA non-coding downstream 7016 28547676 ~ 28547950 (+)
G1358972 NA non-coding downstream 24094 28564754 ~ 28565259 (+)
G1358973 NA non-coding downstream 26536 28567196 ~ 28567770 (+)
G1358979 NA non-coding downstream 34764 28575424 ~ 28575823 (+)
G1358698 kif22 other upstream 487928 28046682 ~ 28047390 (+)
LOC110491768 LOC106579066 other upstream 958226 27561141 ~ 27595350 (+)
G1358292 NA other upstream 1203043 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 2220517 26283071 ~ 26314809 (+)
G1361207 NA other downstream 1261994 29802654 ~ 29804368 (+)
G1361671 NA other downstream 1402781 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 2162987 30700999 ~ 30704172 (+)
G1362902 fgfr2 other downstream 2413949 30954609 ~ 30955975 (+)
G1363401 NA other downstream 2693833 31234493 ~ 31235386 (+)

Expression


Co-expression Network