G1358972


Basic Information

Item Value
gene id G1358972
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28564754 ~ 28565259 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1553298
ccatatatgctgagcacgttggccgcttttccttcactctgcagtgcaactcaacccaaaccatctcaattaggttgagctCGTGTGATTGCGGGACAGCAGGTGCCTAGTGGTTAGgaagttggactagtaaccgaaaggttgtaagaTTGAATCTCTGTAAATATctgacgttctgcccctgaacaacgctGTTAACccacttaactgacttgcctagttatgtaaaataaataaatacataaaaatgtGGAGGCCATCATCTGACTCAGCCCGCcgtcactttccttcttggtcaaatagttcttacacagcctggaggtgtgttgggtcattgtcctgttgaaaaacaaatgatagtcccactaagctcaaaacagatgggatggcgtatcgctgcagaatgctgtgatagccatgctggttaaaagTGTGCctcaaattctaaataaatcacactgtcaccagcaaagcacccccacactatcacaccacctATTCCATGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1553298 True 506 lncRNA 0.45 1 28564754 28565259

Neighbor

gene id symbol gene type direction distance location
nif3l1 nif3l1 coding upstream 276946 28278657 ~ 28287808 (+)
cabp5a LOC106579440 coding upstream 298732 28260283 ~ 28266022 (+)
pagr1 pagr1 coding upstream 483383 28049066 ~ 28081371 (+)
LOC110491776 LOC106579398 coding upstream 578495 27902972 ~ 27986259 (+)
LOC110491775 LOC106579060 coding upstream 741173 27776282 ~ 27823581 (+)
LOC110492866 LOC106521360 coding downstream 14110 28579369 ~ 28607901 (+)
si:ch211-214e3.5 LOC106579413 coding downstream 268105 28833364 ~ 28857801 (+)
nrg3b LOC106579414 coding downstream 359558 28924817 ~ 29353460 (+)
LOC110491795 LOC106579416 coding downstream 859082 29424341 ~ 29480114 (+)
irf3 irf-3 coding downstream 916385 29481644 ~ 29492902 (+)
G1358962 NA non-coding upstream 16804 28547676 ~ 28547950 (+)
G1358960 NA non-coding upstream 20616 28543931 ~ 28544138 (+)
G1358945 NA non-coding upstream 24094 28535318 ~ 28540660 (+)
G1358943 NA non-coding upstream 86454 28474894 ~ 28478300 (+)
G1358944 NA non-coding upstream 90523 28473878 ~ 28474231 (+)
G1358973 NA non-coding downstream 1937 28567196 ~ 28567770 (+)
G1358979 NA non-coding downstream 10165 28575424 ~ 28575823 (+)
G1358953 NA non-coding downstream 15659 28580918 ~ 28581165 (+)
G1358983 NA non-coding downstream 16042 28581301 ~ 28581659 (+)
G1358985 NA non-coding downstream 18596 28583855 ~ 28586837 (+)
G1358698 kif22 other upstream 517364 28046682 ~ 28047390 (+)
LOC110491768 LOC106579066 other upstream 987662 27561141 ~ 27595350 (+)
G1358292 NA other upstream 1232479 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 2249953 26283071 ~ 26314809 (+)
G1361207 NA other downstream 1237395 29802654 ~ 29804368 (+)
G1361671 NA other downstream 1378182 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 2138388 30700999 ~ 30704172 (+)
G1362902 fgfr2 other downstream 2389350 30954609 ~ 30955975 (+)
G1363401 NA other downstream 2669234 31234493 ~ 31235386 (+)

Expression


Co-expression Network