G1358983


Basic Information

Item Value
gene id G1358983
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28581301 ~ 28581659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1553315
atattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaatgtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaag

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1553315 True 359 lncRNA 0.40 1 28581301 28581659

Neighbor

gene id symbol gene type direction distance location
nif3l1 nif3l1 coding upstream 293493 28278657 ~ 28287808 (+)
cabp5a LOC106579440 coding upstream 315279 28260283 ~ 28266022 (+)
pagr1 pagr1 coding upstream 499930 28049066 ~ 28081371 (+)
LOC110491776 LOC106579398 coding upstream 595042 27902972 ~ 27986259 (+)
LOC110491775 LOC106579060 coding upstream 757720 27776282 ~ 27823581 (+)
si:ch211-214e3.5 LOC106579413 coding downstream 251705 28833364 ~ 28857801 (+)
nrg3b LOC106579414 coding downstream 343158 28924817 ~ 29353460 (+)
LOC110491795 LOC106579416 coding downstream 842682 29424341 ~ 29480114 (+)
irf3 irf-3 coding downstream 899985 29481644 ~ 29492902 (+)
LOC110491796 NA coding downstream 921750 29503409 ~ 29511609 (+)
G1358953 NA non-coding upstream 136 28580918 ~ 28581165 (+)
G1358979 NA non-coding upstream 5478 28575424 ~ 28575823 (+)
G1358973 NA non-coding upstream 13531 28567196 ~ 28567770 (+)
G1358972 NA non-coding upstream 16042 28564754 ~ 28565259 (+)
G1358962 NA non-coding upstream 33351 28547676 ~ 28547950 (+)
G1358985 NA non-coding downstream 2196 28583855 ~ 28586837 (+)
G1358986 NA non-coding downstream 6396 28588055 ~ 28588374 (+)
G1358991 NA non-coding downstream 24280 28605939 ~ 28606832 (+)
G1359062 NA non-coding downstream 139049 28720708 ~ 28722576 (+)
G1360136 NA non-coding downstream 190966 28772625 ~ 28772825 (+)
G1358698 kif22 other upstream 533911 28046682 ~ 28047390 (+)
LOC110491768 LOC106579066 other upstream 1004209 27561141 ~ 27595350 (+)
G1358292 NA other upstream 1249026 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 2266500 26283071 ~ 26314809 (+)
G1361207 NA other downstream 1220995 29802654 ~ 29804368 (+)
G1361671 NA other downstream 1361782 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 2121988 30700999 ~ 30704172 (+)
G1362902 fgfr2 other downstream 2372950 30954609 ~ 30955975 (+)
G1363401 NA other downstream 2652834 31234493 ~ 31235386 (+)

Expression


Co-expression Network