G1360170


Basic Information

Item Value
gene id G1360170
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28803252 ~ 28803455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1554601
GTTCTGAGCACCCAACCAGTAGAGGGcgttgagatgtgtgtttatacaaggaGATATTTGTGTGTCTGGAAATCTGatacaggagagcagagggggtcgtgaaagaagagaacagagggggtcagttttatggctgggtgtatgtgttcttgcgatggaatgtctttgtttcCTGGGGTGGTAAGACAACAGAGCTGAGAGGGG

Function

NR:

description
uncharacterized protein LOC110487943 isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1554601 True 204 lncRNA 0.49 1 28803252 28803455

Neighbor

gene id symbol gene type direction distance location
LOC110492866 LOC106521360 coding upstream 195351 28579369 ~ 28607901 (+)
nif3l1 nif3l1 coding upstream 515444 28278657 ~ 28287808 (+)
cabp5a LOC106579440 coding upstream 537230 28260283 ~ 28266022 (+)
pagr1 pagr1 coding upstream 721881 28049066 ~ 28081371 (+)
LOC110491776 LOC106579398 coding upstream 816993 27902972 ~ 27986259 (+)
si:ch211-214e3.5 LOC106579413 coding downstream 29909 28833364 ~ 28857801 (+)
nrg3b LOC106579414 coding downstream 121362 28924817 ~ 29353460 (+)
LOC110491795 LOC106579416 coding downstream 620886 29424341 ~ 29480114 (+)
irf3 irf-3 coding downstream 678189 29481644 ~ 29492902 (+)
LOC110491796 NA coding downstream 699954 29503409 ~ 29511609 (+)
G1360136 NA non-coding upstream 30427 28772625 ~ 28772825 (+)
G1359062 NA non-coding upstream 80676 28720708 ~ 28722576 (+)
G1358991 NA non-coding upstream 196420 28605939 ~ 28606832 (+)
G1358986 NA non-coding upstream 214878 28588055 ~ 28588374 (+)
G1358985 NA non-coding upstream 216415 28583855 ~ 28586837 (+)
G1360178 NA non-coding downstream 6699 28810154 ~ 28810361 (+)
G1360190 NA non-coding downstream 14595 28818050 ~ 28818255 (+)
G1360224 NA non-coding downstream 42391 28845846 ~ 28846052 (+)
G1360226 NA non-coding downstream 43674 28847129 ~ 28847465 (+)
G1358698 kif22 other upstream 755862 28046682 ~ 28047390 (+)
LOC110491768 LOC106579066 other upstream 1226160 27561141 ~ 27595350 (+)
G1358292 NA other upstream 1470977 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 2488451 26283071 ~ 26314809 (+)
G1361207 NA other downstream 999199 29802654 ~ 29804368 (+)
G1361671 NA other downstream 1139986 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 1900192 30700999 ~ 30704172 (+)
G1362902 fgfr2 other downstream 2151154 30954609 ~ 30955975 (+)
G1363401 NA other downstream 2431038 31234493 ~ 31235386 (+)

Expression


Co-expression Network