G1360227


Basic Information

Item Value
gene id G1360227
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28847552 ~ 28847759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1554658
tttataaaactgtttgaattatgtctgtgagtataacagaacttatgtagcaagCAAAACCCCAAGGACTAACTGTTCAAAATtatttattttcctctctctgttccctgagaTGTCATTGCCAAGGGATATTTCTTAggacctgttttcagttcctaccgcttccactggatgtcaccagtctttggaatttggttgaggttattcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1554658 True 208 lncRNA 0.38 1 28847552 28847759

Neighbor

gene id symbol gene type direction distance location
LOC110492866 LOC106521360 coding upstream 239651 28579369 ~ 28607901 (+)
nif3l1 nif3l1 coding upstream 559744 28278657 ~ 28287808 (+)
cabp5a LOC106579440 coding upstream 581530 28260283 ~ 28266022 (+)
pagr1 pagr1 coding upstream 766181 28049066 ~ 28081371 (+)
LOC110491776 LOC106579398 coding upstream 861293 27902972 ~ 27986259 (+)
nrg3b LOC106579414 coding downstream 77058 28924817 ~ 29353460 (+)
LOC110491795 LOC106579416 coding downstream 576582 29424341 ~ 29480114 (+)
irf3 irf-3 coding downstream 633885 29481644 ~ 29492902 (+)
LOC110491796 NA coding downstream 655650 29503409 ~ 29511609 (+)
LOC110491797 LOC106579418 coding downstream 686283 29534042 ~ 29629011 (+)
G1360226 NA non-coding upstream 87 28847129 ~ 28847465 (+)
G1360224 NA non-coding upstream 1500 28845846 ~ 28846052 (+)
G1360190 NA non-coding upstream 29297 28818050 ~ 28818255 (+)
G1360178 NA non-coding upstream 37191 28810154 ~ 28810361 (+)
G1360170 NA non-coding upstream 44097 28803252 ~ 28803455 (+)
G1360233 NA non-coding downstream 886 28848645 ~ 28849254 (+)
G1360235 NA non-coding downstream 1829 28849588 ~ 28850244 (+)
G1360236 NA non-coding downstream 4160 28851919 ~ 28852152 (+)
G1360238 NA non-coding downstream 16950 28864709 ~ 28865439 (+)
G1360243 NA non-coding downstream 25294 28873053 ~ 28873278 (+)
G1358698 kif22 other upstream 800162 28046682 ~ 28047390 (+)
LOC110491768 LOC106579066 other upstream 1270460 27561141 ~ 27595350 (+)
G1358292 NA other upstream 1515277 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 2532751 26283071 ~ 26314809 (+)
G1361207 NA other downstream 954895 29802654 ~ 29804368 (+)
G1361671 NA other downstream 1095682 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 1855888 30700999 ~ 30704172 (+)
G1362902 fgfr2 other downstream 2106850 30954609 ~ 30955975 (+)
G1363401 NA other downstream 2386734 31234493 ~ 31235386 (+)

Expression


Co-expression Network