XLOC_003273


Basic Information

Item Value
gene id XLOC_003273
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11809223 ~ 11823154 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008392
TTTATAATGTCTAGTGAAATATCACAACACAGACTAAATGATCAATCTTGTGTTCTAATAATCTATATTGAGTCattcttattatGTGTTTTAGATGAAGTTGCACACATAGTGGTTAAAACAGCAACTGCATACACAACTAAGTGACCATAATGCTTAGTTCCTATTTATGTTTTTACatccttaataaataatatttaaatataatataacttcataatttataacattaaaacattaaaattaggGTAAAACACAAATGATCttttaaatattactatttatcattaataaataatataaaacattaaaaatataaaaataaagtaaaatacaaatGTGCTTataaaaatatgaccttttattattacagttattctcagtggctttggtgcatttctcacaacactatttacatttgcacaacagttaatgcatttctcaaaacaattaatcatttgtacacatcatagtagcagtttctcattcctttcaacaaattgcaaatgcttttggacatgcatcaattgctttcatacaactctctgctgatttataacattatcatttgcttatgtcatgtcagtaactgaacttgtgaatgctgaatagtcattccgtataaaactaatagtcctcatttcattacttgagtcattatatacacaaatgttgaactagttgtcacaatctgtcaagctaattttatgaaatgtttttaagtctttttttttttcctaagaaTGTCTTTTTAATTGAACAATTTCCTGAATGATTTACAGATACAGTATATGCTGCAGGTTCAGTTctaatatgttctgcaatattgtttacagttgtgcacagctctacccaaaggaagtttctgtttgttgtaaataagggtgtgtttattcttttgcacaatgctgtgaataaattagaatcgcaaagagcaaatgcagtaaaactgtgaaacatacatattcagtgtcttgtactcagatacttcagtaaatgcagtgatgtctaactttactgtagttttcagatggctgtgcaaatagtataaagtgctgtcttgagcattttcaggaagtgtcaccaacatctgacttttttgcattggaacaaatatacagagtaaactgtcataatgaaaacaggacaaagtcatttgactatcttgtcAGGACTttcaatggtgtcaggacttttaaTCTTAATGATACAGACACTTTTATTGACATCAATATTTGCTTTTGAgaaatgagctctccattttgagcaagtgacacgcttttgcaggttatcaaggttttgcagtttgtactaattgacATGTGAAATGCataaactgttgtgcaaatgtaaatagtgttgtgagaaatgcaccaaagccactgagaaaaactgtaattaataataaaaaaaatatcattattaaaaataagtaaaacacaAGTGAGCTCATAAACAGTTAACCAGCAGTATAATACATACTTATATAATTGTATTCATTATAtattatgataaatattttaaattatattttgttataaatgCACAAAAGACAAAAAGATATATAACGGATCTTTATGAAATGTTATGGGACAGAAGGTgaggttaaaaaataataaagc

Function

GO:

id name namespace
GO:0009060 aerobic respiration biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008392 True 1622 lncRNA 0.29 2 11809223 11823154

Neighbor

gene id symbol gene type direction distance location
XLOC_003272 pimr93 coding upstream 4503 11797026 ~ 11804720 (+)
XLOC_003271 CR848705.1 coding upstream 12924 11792408 ~ 11796299 (+)
XLOC_003270 jupa coding upstream 27312 11719575 ~ 11781911 (+)
XLOC_003269 CR556712.1 coding upstream 218547 11588078 ~ 11590676 (+)
XLOC_003268 NA coding upstream 295238 11504014 ~ 11513985 (+)
XLOC_003275 NA coding downstream 10190 11833344 ~ 11871147 (+)
XLOC_003276 NA coding downstream 16673 11839827 ~ 11876130 (+)
XLOC_003277 pimr94 coding downstream 19570 11842724 ~ 11849995 (+)
XLOC_003278 NA coding downstream 68086 11891240 ~ 11903510 (+)
XLOC_003279 zgc:64002 coding downstream 151554 11974708 ~ 11979854 (+)
XLOC_003267 BX324177.19 misc upstream 346621 11462306 ~ 11462602 (+)
XLOC_003266 BX324177.20 misc upstream 348121 11460806 ~ 11461102 (+)
XLOC_003265 BX324177.12 misc upstream 358781 11450155 ~ 11450442 (+)
XLOC_003264 BX324177.22 misc upstream 367467 11441460 ~ 11441756 (+)
XLOC_003262 BX324177.15 misc upstream 379534 11429393 ~ 11429689 (+)
XLOC_003281 BX469912.12 misc downstream 339598 12162752 ~ 12163048 (+)
XLOC_003283 BX469912.14 misc downstream 348141 12171295 ~ 12171591 (+)
XLOC_003285 BX469912.9 misc downstream 364152 12187306 ~ 12187602 (+)
XLOC_003286 BX469912.6 misc downstream 366571 12189725 ~ 12190024 (+)
XLOC_003287 BX469912.15 misc downstream 385755 12208909 ~ 12209205 (+)
XLOC_003252 BX324177.5 non-coding upstream 428336 11353459 ~ 11380887 (+)
XLOC_003282 NA non-coding downstream 343332 12166486 ~ 12166790 (+)
XLOC_003302 NA non-coding downstream 643612 12466766 ~ 12467060 (+)
XLOC_003253 NA non-coding upstream 449508 11359421 ~ 11359715 (+)

Expression


Co-expression Network