G1360249


Basic Information

Item Value
gene id G1360249
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28882690 ~ 28883403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1554684
AAGATATTTGTCCTCAAAAGGGTGGGGGGTAAATATGCAATGCTGGGCTTCAGTGGTAACACTATACTGTGTGTGGCACTCctaaaaatacattaaaacagATCAAAGTAATATTTGAAACATTCAAAAAACTTGTAATGCAAATATTCTGTAAACTTCACTGAAAGAAACCCTTAAATGTTTTATTCCAACAGTTAAGTGCAAATATTCTGTAAATGTAACTGAAAACAATTAAAAGGTGTTCAACTAGCTAGTAAAACATGCCAAACATGTAGTCCCAGTCTTGACCAGACCCAAAGGCTTTTTGCAAAAGAACAGGAAGATAAATTATAAAAACGGTTTCCTTGAGTTTCAAAAGACTGCTTCTCATGTTGTGATCACAAATCACCTtgcttacatgctgaccacaccattCACATTACGTGCGCAAACAgtgaaaaataaatgtacacttacacagtggtgtaaagtactcaagtaaaaatactttaaaggactacttaagtagttttttggggtatctgtactttactatttatatttgactacttttacttcactacattccttaagaaaatattgtacatttcactccatacattttccttgacaccgaaaagtactagttacattttgaatgcatttACATTTtgaagtactagttacattttgacaaattcactcacttatcaaccgaacatccctggtcatccc
>TU1554685
CAGTTAAGTGCAAATATTCTGTAAATGTAACTGAAAACAATTAAAAGGTGTTCAACTAGCTAGTAAAACATGCCAAACATGTAGTCCCAGTCTTGACCAGACCCAAAGGCTTTTTGCAAAAGAACAGGAAGATAAATTATAAAAACGGTTTCCTTGAGTTTCAAAAGACTGCTTCTCATGTTGTGATCACAAATCACCTtgcttacatgctgaccacaccattCACATTACGTGCGCAAACAgtgaaaaataaatgtacacttacacagtggtgtaaagtactcaagtaaaaatactttaaaggactacttaagtagttttttggggtatctgtactttactatttatatttgactacttttacttcactacattccttaagaaaatattgtacatttcactccatacattttccttgacaccgaaaagtactagttacattttgaatgcatttACATTTtgaagtactagttacattttgacaaattcactcacttatcaaccgaacatccctggtcatccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1554684 False 714 lncRNA 0.34 1 28882690 28883403
TU1554685 True 523 lncRNA 0.34 1 28882881 28883403

Neighbor

gene id symbol gene type direction distance location
si:ch211-214e3.5 LOC106579413 coding upstream 24889 28833364 ~ 28857801 (+)
LOC110492866 LOC106521360 coding upstream 274789 28579369 ~ 28607901 (+)
nif3l1 nif3l1 coding upstream 594882 28278657 ~ 28287808 (+)
cabp5a LOC106579440 coding upstream 616668 28260283 ~ 28266022 (+)
pagr1 pagr1 coding upstream 801319 28049066 ~ 28081371 (+)
nrg3b LOC106579414 coding downstream 41414 28924817 ~ 29353460 (+)
LOC110491795 LOC106579416 coding downstream 540938 29424341 ~ 29480114 (+)
irf3 irf-3 coding downstream 598241 29481644 ~ 29492902 (+)
LOC110491796 NA coding downstream 620006 29503409 ~ 29511609 (+)
LOC110491797 LOC106579418 coding downstream 650639 29534042 ~ 29629011 (+)
G1360248 NA non-coding upstream 822 28881554 ~ 28881868 (+)
G1360245 NA non-coding upstream 4162 28878314 ~ 28878528 (+)
G1360243 NA non-coding upstream 9412 28873053 ~ 28873278 (+)
G1360238 NA non-coding upstream 17251 28864709 ~ 28865439 (+)
G1360236 NA non-coding upstream 30538 28851919 ~ 28852152 (+)
G1360251 NA non-coding downstream 1422 28884825 ~ 28930929 (+)
G1360256 NA non-coding downstream 8662 28892065 ~ 28897416 (+)
G1360336 NA non-coding downstream 121950 29005353 ~ 29019596 (+)
G1360950 NA non-coding downstream 484433 29367836 ~ 29368083 (+)
G1360967 NA non-coding downstream 498235 29381638 ~ 29381842 (+)
G1358698 kif22 other upstream 835300 28046682 ~ 28047390 (+)
LOC110491776 LOC106579398 other upstream 936849 27902972 ~ 27986259 (+)
LOC110491768 LOC106579066 other upstream 1305598 27561141 ~ 27595350 (+)
G1358292 NA other upstream 1550415 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 2567889 26283071 ~ 26314809 (+)
G1361207 NA other downstream 919251 29802654 ~ 29804368 (+)
G1361671 NA other downstream 1060038 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 1820244 30700999 ~ 30704172 (+)
G1362902 fgfr2 other downstream 2071206 30954609 ~ 30955975 (+)
G1363401 NA other downstream 2351090 31234493 ~ 31235386 (+)

Expression


Co-expression Network