G1361685 (LOC106579432)


Basic Information

Item Value
gene id G1361685
gene name LOC106579432
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 29955579 ~ 29956671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1556240
caacactcagacatcagacatttacaaataaagcatgtgtttagtcagatcagaggcagtaggaatgaccagggatgttctcttgatataattgtgtgaattagaccattttcctgtcctgataagcattcaaaatgtaatgtacTTTTGGAAGTCAGGGAGAATGTATGGAGCAAAAAATACATACTTTAAcgtcactacattcctaaagaaaattaaaagtaaagtacagatatcccccaaaaatgacttaagtagtactttcaagtatttttacttaagtactttacaccactgggtaaTGATCTAATGAGACATTTAAGGGAATGTTCTCTAAAAGTGTGGGAATGTTGTTAGCTGGGCACCTGGATCTTAGCTGAATGTGTAAGAGACCAAATAATATCCTGCAAGAGACAAGCTGGCCATAATGTCCTATTTATCAAAATGTTTTATCTTAGTCTTTCAGTTTGCTTTGCTATTTTATGTTCCAGGTATTCAATTGACACACAGGCCTATGCATTTGATCCACCATCAggcattaaattaaattaaaatccCTTACACATACCTTCCATGGCTCACAAAGATCTTCACTGGCATTTGAAGTTCCCAGACTATACACACTCTACCTCCTCCAACCCCTGGCCCTCTGCCCGCTTTCCCAAATCTCTCCTGGCTGTATACTGGTCACAGTGGTCAGTGTCTGACACTCAGTCtatgaggagaggatagaggaagagTCAGGGGGACAGGAGGACACTCCACTCAGTGGTGGATCTGCTCAGACCAGCGAGGCTAGTCATAACTCTGTGATCTCCAGCGGGCTCTCGGACAGTGTGTTATCGACCTTGTCGTTGTGGTGCAGCGGCGTGGACTTGGCCGACTCAGTACGGGCATTGCGCTCGGTGTACAGCCCCCTGTCGGTGGCGTTAAGCGCCTCCATGGAGCGCGCCAGGGCCAGCTGGTTGTCCTCAGGCAGACTgttgaggtcagaggtcaggagcGTGCCCATGCTGCCGTGAACAACGTGCACGCCGTCGGGTCCCCTCATCTCCACGGGGAGCTTGTGTTTGAAGCGCAGCGTACCCCAGCT

Function

NR:

description
cadherin-23-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1556240 True 1093 lncRNA 0.46 1 29955579 29956671

Neighbor

gene id symbol gene type direction distance location
LOC110491801 if3ei coding upstream 30415 29907292 ~ 29925164 (+)
LOC110491800 LOC106579437 coding upstream 176438 29776440 ~ 29779141 (+)
LOC110491799 LOC106578370 coding upstream 228260 29714278 ~ 29727319 (+)
LOC110491797 LOC106579418 coding upstream 326568 29534042 ~ 29629011 (+)
LOC110491796 NA coding upstream 443970 29503409 ~ 29511609 (+)
LOC110491802 cssa19h10orf105 coding downstream 185758 30142429 ~ 30144341 (+)
LOC110491805 LOC106579442 coding downstream 642723 30599394 ~ 30658325 (+)
LOC110492869 LOC106599969 coding downstream 744328 30700999 ~ 30704172 (+)
LOC110492895 NA coding downstream 751352 30708023 ~ 30708936 (+)
LOC110491812 NA coding downstream 1060904 31017575 ~ 31075269 (+)
G1361684 NA non-coding upstream 627 29954510 ~ 29954952 (+)
G1361667 NA non-coding upstream 13891 29941123 ~ 29941688 (+)
G1361592 NA non-coding upstream 15202 29940154 ~ 29940377 (+)
G1361529 NA non-coding upstream 122404 29832960 ~ 29833175 (+)
G1361524 NA non-coding upstream 126783 29828570 ~ 29828796 (+)
G1361687 NA non-coding downstream 765 29957436 ~ 29957661 (+)
G1361689 NA non-coding downstream 1778 29958449 ~ 29958664 (+)
G1361691 NA non-coding downstream 2786 29959457 ~ 29959681 (+)
G1361692 NA non-coding downstream 3360 29960031 ~ 29960319 (+)
G1361695 NA non-coding downstream 5276 29961947 ~ 29962162 (+)
G1361671 NA other upstream 11823 29943441 ~ 29943756 (+)
G1361207 NA other upstream 151211 29802654 ~ 29804368 (+)
G1358698 kif22 other upstream 1908189 28046682 ~ 28047390 (+)
LOC110491776 LOC106579398 other upstream 2009738 27902972 ~ 27986259 (+)
LOC110491768 LOC106579066 other upstream 2378487 27561141 ~ 27595350 (+)
G1362902 fgfr2 other downstream 997938 30954609 ~ 30955975 (+)
G1363401 NA other downstream 1277822 31234493 ~ 31235386 (+)
G1364768 NA other downstream 2444763 32401434 ~ 32401808 (+)
G1364907 NA other downstream 2650119 32606790 ~ 32607133 (+)

Expression


Co-expression Network