G1361741 (LOC106579432)


Basic Information

Item Value
gene id G1361741
gene name LOC106579432
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 30022415 ~ 30024694 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1556297
GCTTTAAGTTGATTGGAGAATCATTTATTTGTTAGATATAAGaagaataaacatttttgttGCACCATATCCTTGGATGTCATTGAATGTTTGGCCGTCGGGAaaccttgagtgtggactgtatgcgTACCAAACAACCCCGCTTCAGGCTTGGGCAGTGGCTATGGTAAAGACGAAAGGAAGCCACTACAATGGCCATTGAAATGTTAGCTATTGAAATTAGATATAATATCAAGGGGATAGAAATCCAgtgcttaaaaacaaaggtgtcattgtacgctgacgACTCATGTTTTCTTTTACATCCATACTTTGGATCCCtgcacagcctcatagaggatctagataattcctctaacctctctggattacaactGAGCCGAATTGTACCATAATACGTATTGGATTGAAGAAGAAACAAAtctaatcacattttattggtcacatacacagggttagcagatgttattgcgagtgtagcgaaaagcttgtgcatttagttccaacagtgcagcaatatctaacaattccacaacaaatagcTAATGGaataaggaatggaataagaataaaaaaatatatacatatatggatgagcaatgacagagcagcATAGTCTAAGATGCAatatatagtatagaatacagtatagtcacatgagatgagtaatgcaaaatatgtaaaaatggttaaagtgacattatttaggtgactagtgttccatttattaaagtggccgaTTATTTCATGTCTGCATGTAGACAGCAGCCTCTttctgctagtgatggctgtttaacagtctgatggccttgagatagaagctgtttttcagtctctcgggcccAGCGTTCATGCACCTGTACTGGccccgccttctggatggtagcggggtgaacaggcagtgactcaggtgattgttgtccttgatgatcttttttggccttcctgtgacatcgggtgctgtaggtgtcctggagggcatgtaGTTTGCCCCATTgaggcgttgtgcagaccgcaccaccctctggagagccctgcggttgtgggcggtgcagttgccgtaccaggtggttatcagTTGATGGGTCCTCCAGTCTGAGGTAGTCCCCTCTGGGCAGGTGTAGCAGCTGGTAGATGACCTGTCCGTTAGGGCCTTTGTCTGGGTCCACAGCTGACACGGACAGCAGAGTGGTGCCTGGCTGAGCGCCTTCCAGAATCTTCTCTGAGAAGTTGGCCACTCCAAAGGGTCGGAACCGCGGGGCGTTGTCATTCACATCCAGCACGTTCACTATCAGTCTC

Function

NR:

description
cadherin-23-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1556297 True 1299 lncRNA 0.45 2 30022415 30024694
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110491801 if3ei coding upstream 97251 29907292 ~ 29925164 (+)
LOC110491800 LOC106579437 coding upstream 243274 29776440 ~ 29779141 (+)
LOC110491799 LOC106578370 coding upstream 295096 29714278 ~ 29727319 (+)
LOC110491797 LOC106579418 coding upstream 393404 29534042 ~ 29629011 (+)
LOC110491796 NA coding upstream 510806 29503409 ~ 29511609 (+)
LOC110491802 cssa19h10orf105 coding downstream 117735 30142429 ~ 30144341 (+)
LOC110491805 LOC106579442 coding downstream 574700 30599394 ~ 30658325 (+)
LOC110492869 LOC106599969 coding downstream 676305 30700999 ~ 30704172 (+)
LOC110492895 NA coding downstream 683329 30708023 ~ 30708936 (+)
LOC110491812 NA coding downstream 992881 31017575 ~ 31075269 (+)
G1361695 NA non-coding upstream 60253 29961947 ~ 29962162 (+)
G1361692 NA non-coding upstream 62096 29960031 ~ 29960319 (+)
G1361691 NA non-coding upstream 62734 29959457 ~ 29959681 (+)
G1361689 NA non-coding upstream 63751 29958449 ~ 29958664 (+)
G1361687 NA non-coding upstream 64754 29957436 ~ 29957661 (+)
G1361870 NA non-coding downstream 181136 30205830 ~ 30295068 (+)
G1361945 NA non-coding downstream 277179 30301873 ~ 30305675 (+)
G1361947 NA non-coding downstream 281605 30306299 ~ 30306512 (+)
G1361963 NA non-coding downstream 313606 30338300 ~ 30338549 (+)
G1361967 NA non-coding downstream 318531 30343225 ~ 30343438 (+)
G1361671 NA other upstream 78659 29943441 ~ 29943756 (+)
G1361207 NA other upstream 218047 29802654 ~ 29804368 (+)
G1358698 kif22 other upstream 1975025 28046682 ~ 28047390 (+)
LOC110491776 LOC106579398 other upstream 2076574 27902972 ~ 27986259 (+)
LOC110491768 LOC106579066 other upstream 2445323 27561141 ~ 27595350 (+)
G1362902 fgfr2 other downstream 929915 30954609 ~ 30955975 (+)
G1363401 NA other downstream 1209799 31234493 ~ 31235386 (+)
G1364768 NA other downstream 2376740 32401434 ~ 32401808 (+)
G1364907 NA other downstream 2582096 32606790 ~ 32607133 (+)

Expression

G1361741(LOC106579432) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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G1361741(LOC106579432) Expression in each Bioproject

Bar chart with 19 bars.
G1361741(LOC106579432) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network