XLOC_003274


Basic Information

Item Value
gene id XLOC_003274
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11820364 ~ 11854446 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008554
GTACTTTTATTCAGACATTCTGAGTGTGCCTGTCACAGGTGAGAGTTTTATGTGTCTTTATGACACGAAGTACATCAAATATTGTGGTGTTACTATAtttttacatacatatatgtttgtgttgtttaaaagtaaatgtaaaaagtaaGCTTATCAAATGATGTTCCACACTGGTACTAGTTAAAATGACACTATATTTGTTCAGTACTAGAGCTGTCAAACCATTAATCACTATTAATAGCATCCGAGGTAACAGTTTGTATTTGATAATACATTagcatatacagtacacacacacacacacacacacatacacagttgaagtcagaattattcgccctcctgtgaattgttttttcctttttcaaatatttaacaaattatgATTAATAGAactagaaaattttcacagtatttcttatattttttgttctgtagaatTATTGGTAATATTTCAactgtaataaaagcagtttttacatctttttaaaaccattttaaggtcaatgttattagctcctttaagacatatattttcgattgtctacagaacaaacaatctttATACAAGGActtccctaattaacctaattaggcctttaaatgtcactttaagctggatagtATCTTAAACaatatcaagcaaaatattatttactgtcatcatggcaaagatcaaagaaatcagttattagaaatgagttatcaaaactgtttagaaatgtgttaaacagaaattaatgacaaaaatatacAGAAGCGCTAATaatttaagagggctaataactgACTTCAACTAGatacacagaaatacacacacacacacacacacacacacacacacacacatatttcacaaaaataattttttgttttggatACACTAATTGTTTGACAGCACTATTCAGTTCATATATTTCTGCGAAAAaccataaacaaaaatataatcgATCTAATGTAAAACcgtaataaagaaataaatagcaaataaatacagtaatatgttataattcaataaataactattattaaaaGAGATGTAATCATGCTCataaatgtttcatattattgttattgatatgAGTAATATAAGCTACAATACGCtaattataatttagttttacaaaaatatttaaaatattattgggCGGGAGAGGTGGGCTTTATAATGTCTAGTGAAATATCACAACACAGACTAAATGATCAATCTTGTGTTCTAATAATCTATATTGAGT

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0021536 diencephalon development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022612 gland morphogenesis biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0035270 endocrine system development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0048850 hypophysis morphogenesis biological_process
GO:0048852 diencephalon morphogenesis biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0033504 floor plate development biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0007418 ventral midline development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0030900 forebrain development biological_process
GO:0021508 floor plate formation biological_process
GO:0021510 spinal cord development biological_process
GO:0021511 spinal cord patterning biological_process
GO:0060322 head development biological_process
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008554 True 1235 lncRNA 0.28 2 11820364 11854446

Neighbor

gene id symbol gene type direction distance location
XLOC_003272 pimr93 coding upstream 15644 11797026 ~ 11804720 (+)
XLOC_003271 CR848705.1 coding upstream 24065 11792408 ~ 11796299 (+)
XLOC_003270 jupa coding upstream 38453 11719575 ~ 11781911 (+)
XLOC_003269 CR556712.1 coding upstream 229688 11588078 ~ 11590676 (+)
XLOC_003268 NA coding upstream 306379 11504014 ~ 11513985 (+)
XLOC_003278 NA coding downstream 36794 11891240 ~ 11903510 (+)
XLOC_003279 zgc:64002 coding downstream 120262 11974708 ~ 11979854 (+)
XLOC_003280 si:ch211-156l18.8 coding downstream 198345 12052791 ~ 12092178 (+)
XLOC_003282 NA coding downstream 312040 12166486 ~ 12166790 (+)
XLOC_003284 si:ch211-156l18.7 coding downstream 320716 12175162 ~ 12184543 (+)
XLOC_003267 BX324177.19 misc upstream 357762 11462306 ~ 11462602 (+)
XLOC_003266 BX324177.20 misc upstream 359262 11460806 ~ 11461102 (+)
XLOC_003265 BX324177.12 misc upstream 369922 11450155 ~ 11450442 (+)
XLOC_003264 BX324177.22 misc upstream 378608 11441460 ~ 11441756 (+)
XLOC_003262 BX324177.15 misc upstream 390675 11429393 ~ 11429689 (+)
XLOC_003281 BX469912.12 misc downstream 308306 12162752 ~ 12163048 (+)
XLOC_003283 BX469912.14 misc downstream 316849 12171295 ~ 12171591 (+)
XLOC_003285 BX469912.9 misc downstream 332860 12187306 ~ 12187602 (+)
XLOC_003286 BX469912.6 misc downstream 335279 12189725 ~ 12190024 (+)
XLOC_003287 BX469912.15 misc downstream 354463 12208909 ~ 12209205 (+)
XLOC_003252 BX324177.5 non-coding upstream 439477 11353459 ~ 11380887 (+)
XLOC_003302 NA non-coding downstream 612320 12466766 ~ 12467060 (+)
XLOC_003304 NA non-coding downstream 639426 12493872 ~ 12494177 (+)
XLOC_003307 NA non-coding downstream 668324 12522770 ~ 12523029 (+)

Expression


Co-expression Network