G1363871


Basic Information

Item Value
gene id G1363871
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 31670438 ~ 31676016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1558557
gccctgccagtgcggcgaggtggaatagcccgcactgggctatgcaggagaaccggagacaccgagcgcaaggctggtgccatgtaagccggcccaaggagacgcactggggaccagctgcgtagagccggcttcatggcattaggctcgacgctcaatttagcccggccgacacgcggagctggaatataccgcaccgggctatgcacccgcactggagacaccgtgcgcaccactgcataacacggtgcctgtctggtctctctagccccccggtaagcacagggagtctgcccaggtctcctacctggcgtagccatactccctgttagccccccccccaagacatttttggggctgactctcgggcttccgtccgcgccgccgtgcttgctttgccaactccattctccgataaccttccgcgcactgcttcatcgaatcccaggcggactccggcactctccctgggtcgaccgcccacctgtctatctcctcccaagaagtatagtccatactgtactcatttttgggctgctcctgttgcctcttcacctgctgcaccttggtgcggctacactcccctggtttagcccagggtcctctcccgtcgaggatttcctcccatgtccagaaatccttactaCGTATCCCCTCTTTTcactgctgttgctgcctgttgacacgctgcttggtccgttggtggtgggtgattctgtaacggttttcttggtgagaaggagagtcggaccaaaatgcagcgtgtagattgcgatccatgttttaataaacaaacggaaaacacgaatcaatacaaacactacaaaataaagaacgtaacgaaaacctaaacagccctatctggtgaaaacacatagacaggaacaatcacccacaaacacacagtgaaacccaggctacctaaatatggttcccaatcagagacaatgacgaacacctgcctctgattgagaaccatatcaggccgaacatagaactggacaaactagacatgtaacatagaatgcccactcagatcacaccctgaccaaccaaaacatagaaacatacaaagtaaactatggtcagggtgtgacagtaatgaggaagtcaatctctcttccactttgagccatgagagattgacatgcatgtcattaatgttagctctccgtgtacttttaagggccagccatgctgccctgtccTGAGTCAGCTGCAATTTCCCcatgtccctctttgtggcacctgaccacacgactgaacagtagtccaggtgcgacaaaaccattgcctgtaagacctgccttgttgatagtgttgtttagaaggcagagcagctctttattatggacaaacttctccccatcttaagCCTTACTCagagccagtggcatgtcgttagtaaagaatGAAAAAATCaagggcctaaacagctaccctggggaattcctgcttccacctggattatgtttgagaggcttccattaaagaacaccctctgtgttctgttagacaagtaactctttatccatattatagcaggggatgtaaagccataacacatacgtttttccagcagcagactatgatcgagaatgtcaaaagctgcactgaagtctaataagacagccctgtatctggtcgaACACAATTTTCTTCCAGAAGTTTACTAGGGGTTGgaaacaggctgattggtcggctatttgtgCCAGTAAGGGgcgctttactattcttgggtagaggaatgactttagcttccctcaaggcctgagggcacacactttctagtaggcttaaattgaagatgtggcaaataggagtggcaatatcgtccactattatcctcagtattCTTCCCACCATGATtttcagaccctggtggcttgtcattgttgatagacaacaataattgtttcacctcttccacattgACTTTATGGAATttaaaagtacaattcttgtctttcataatttggtcagatatacttggatgtgtggTGTTAGCGtctgttgctggcatgtcatccctaagtttgtttatcttgccaatgaaaaggtaattgaagtagttggcaatatcagtgtgTTTTGTGATAAATGAGCCATCCGATTCAATGAATGATGCAGTCGAGTTGGCATTTTCCCAAAAAATTTTATTTTacggtgctccaaagctttttactgtcattctttatatcatttatctttgtttcatagtatagtttatttttatttagcttAGTCACGTGCTTTTGCttattattttctttaagcaatggctttttttctggccactcaaaaaccctagaatgagtccaaacgtttgactggtactgtttaaatacactatatatacaaagtatgtggacactacTTCAAATGAGTGAATTCTGCTATTTGAGCTAcaaccattgctgacaggtgtatacaatctttatagacaaacattgacagtagaatggccttactgaagagctctgcGACTTTCAATGTTGCACTGTCGTAGGATGCCAtcgttccaacaagtcagttaatcaaatttctgccctgctagagctgctccggtcaactgtaagtgctgttattgtgaagttgaaaCGTCTCGAAGCAACAATGGTTCAGcctcaaagtggtaggccacacaagctcacagaacgggactgccgagtgctgaagcccagtgagtaaaaatcatctgtcatGACTCTCTCTCCTTGGTGAGGATCAAAGGTGCCAGATCAGCTTGGTAATGGCCGACAGATAGCCAGAGACCCCCCTTCTCTACCACAGGAGGATATACAAGAGAAGCAAAAAAACATCAATGCAGACACAGGGATGAAACTCGGGAAGTGACAAATATAGGGAAGGCAATCAATGATGTGATggtgtccaggtgagtccaatgaagcgctagtgcgcataacgatggtgacagatgtgcgtaatgatgagcagCCTggagccagagagggggagcgggagcagacgtgacacatTTATTAAATAGTTTATTCATAAGAATGCACCTATTCAGAAACTGACTGTTTCAActgttaacttcttgatgcacccatcccgttagcgggatctttttcgtcaacatccgctgaattgcagagtgccaaattccattaaattactaaaaatattacattttcatgaaatcacaagtgcaatatagcaaaacacagcttagcttgttgttaatccacctggcgtctCGGGGAAAGCATACCAAgagtttatgtaaggacatctctctcagtagacaaaatattacaaacagctagcagccaagtagattggtgaccaaagtcagaaaagcaataaattaaatcgcttaccttttttactgaaactatgtctaaagactgttcaaaCCAtggggaatctggttgatatccctttaaatggagcgaaggcaggcaatggaacagagagctttcaggaaaaacagcacttccaggttggattttcctcaggtttgttcctgcaatatcagttctgttattctcacagacaatatcttgacagttttggaaactttagagtgttttctatcctaatctgaccattatatgcatattctagcttctgggcctgagaaataggcagtttaatttgggtatgtttttcatccaaacatcaaaacgtcccctacactcaacagtttTTAAGGCCCTGTCGATTAATGAGGAATTGAAAAGCTGTATGGTTCGAGAGAGACGAGGCAAAAGCAGTGGTGAATAAGTCTGGCTGATTGGCAAGCAATGtcaattgagaaattatgtgacaaaactgaaaAGAAGAATAAGAAATTGCATTACGAAAGCAAGATATGTTATCTCTTTTGGGATaggcattttcacttttggatgaatagcgtgcccagagttaACTGCCTcatactctgtcccagatgcaaatatatgcatattattattagtattggatagaaaacactctgaagtttctaaaactgtttgaatgattaTGGCagacgaaaacctgagaaaaatccaaccaggaagcgggaaatctgaggtttgtagtttttcaaagcttggcctaccaaacgcacagtgtctatggagtcaagttgcacttccaacggcttccactagatgtcaaccgtctttagaaacttgaatgaggattctactataaaggaggggctcatgagacctgtttgagtcaggggtctggcagagtgtctcaggctcgtgacaCACGCTCCCAACAGAGTTAGCTcttgttccagtgcttttcttcagacataggaattctccagttggaagcTTATTGATGTTTATGTTAAAAacttcctaaagattgattccatacatcgtttgacttgtttctacaacctgtaacggaacttttcaagtttgtctggacgaagtgctagcacctcatgaagatggattactgggctgaacacgctaacaacaagtggctatttggatataaatgatggactttatggaacaaatcagtcatttattgtcgaactgggattcctgggagtgccttctgatgaagatcatcaaaggtaaattaatatttatggtgttatttctaacttctgttgactccaaaatggcggatatttctctggctggattgggttttgagcgccgttctcagattatgcttttcccgtgaagtttaaaaaaaaaatctggcacagcagttgcattaacctgtctacgatactggttcccaattggggatcaaccctcccacgttcagctgaaacggtggcgcatggaacgcaaaaatattcttaaaaatatttaacctccacacattaacaagtccaatagctcaaatgaaagataaacatcagatttctaaaatgttttacggcgaaaacatagcacatatatatgtaaaaccaccaccagacacagctcatttcaatagccaaaacatgcaatcaacaaacgcaggattaaaaaataaatcgctcactaaccttttgaaaatcttcatcagaagacagtaatatgacatgttacacagtacatattttttttttttcaataatatgccatttatatccataaatgtccatttacagtgagttcacgttcagaaattactcaaaaatgcccgcaggaaatctatgtagcgcggcaagataacgtaaatagacatcataaactttgactaaatatacatgttctacatatagttagaaagatacactgcttctttatgcaaccgctgtgttagatttatttttaacgttacagaaatcgcacactattccatatgctgagacagcgctcagttccaagctacatttccacgtaatgttggagtcaacagaaacacagatttaagcataaatattcccttaccttcgatggtcttcgttcagaatgttctggaaggcttcatacttacccaatacattgtttggtttcaagtcttgcgtctttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1558557 True 5451 lncRNA 0.43 2 31670438 31676016

Neighbor

gene id symbol gene type direction distance location
LOC110491813 LOC106579422 coding downstream 174138 31474791 ~ 31496300 (-)
LOC110491807 LOC106576884 coding downstream 208193 31314091 ~ 31462245 (-)
LOC110491810 LOC106579441 coding downstream 362897 31305083 ~ 31307541 (-)
LOC110491809 p5cs coding downstream 384805 31270609 ~ 31285633 (-)
LOC110492870 ate1 coding downstream 487447 31130117 ~ 31182991 (-)
si:ch211-28p3.4 LOC106579421 coding upstream 36285 31712301 ~ 31728943 (-)
ttc34 ttc34 coding upstream 274503 31950519 ~ 31958002 (-)
LOC110491820 LOC106567387 coding upstream 290706 31966722 ~ 31989796 (-)
LOC110491822 LOC106567384 coding upstream 380932 32056948 ~ 32096133 (-)
LOC110491823 NA coding upstream 405691 32081707 ~ 32086786 (-)
G1363938 NA non-coding downstream 42745 31582420 ~ 31627693 (-)
G1363876 NA non-coding downstream 197906 31472331 ~ 31472532 (-)
G1363874 NA non-coding downstream 201464 31467896 ~ 31468974 (-)
G1363777 NA non-coding downstream 324055 31345975 ~ 31346383 (-)
G1363866 NA non-coding upstream 4131 31680147 ~ 31682329 (-)
G1363869 NA non-coding upstream 7278 31683294 ~ 31684951 (-)
G1363868 NA non-coding upstream 16647 31692663 ~ 31697167 (-)
G1363999 NA non-coding upstream 58805 31734821 ~ 31735092 (-)
G1364043 NA non-coding upstream 127134 31803150 ~ 31803378 (-)
G1363836 NA other downstream 19741 31639437 ~ 31650697 (-)
G1361619 NA other downstream 1745284 29923871 ~ 29925154 (-)
G1361290 NA other downstream 2172883 29497113 ~ 29497555 (-)
taok2b LOC106579406 other downstream 3489498 28177715 ~ 28237354 (-)
G1359763 NA other downstream 3506211 28163463 ~ 28164227 (-)
G1364105 NA other upstream 209733 31885749 ~ 31886112 (-)
G1364348 NA other upstream 342778 32018794 ~ 32019498 (-)
G1365099 NA other upstream 958449 32634465 ~ 32635511 (-)
G1366703 NA other upstream 2007995 33684011 ~ 33684473 (-)
G1366756 NA other upstream 2071384 33747400 ~ 33751407 (-)

Expression


Co-expression Network