G1363868


Basic Information

Item Value
gene id G1363868
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 31692663 ~ 31697167 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1558554
TCCTatctgagacgcagatgtctcaactaggcacctggaaatgcaaatgcgctacgctaaatgctaaatgtactcgttaaaactcaaacgttcattaaaacacacatacagggtattgaattaaagctacactcgttgtgaatctagccaacaagtcagatttttaaaatgcttttcggcgaaagcatgagatgctattatctgatagcatgcaacaccccaaaatgcctgaaggcgaagtaaacaaaagaattagcgtagccggcgctacacaaatagcagaaataaaatataaaacattcattacctttgacgagcttctttcttggcactcctatatgccccataaacatcactattgggtctttttttcgattaaatcggttcatatatacccaaaatagccatctatggaaactgtgtaattcagaaaaaaacattgtttcaaaatgctgcgtcattttttaaaattaaaaaagttgacgataaactttcacaaaacacttcgaaatacttttgtaatccaactttaggtattagtaaacgtttataatctatcaaaatgatcacggggcgatgtatattcaatagctccacgtcttgaaatcatggtcgaaaatctctcttccaaaacatcctgtcggAGACTGGAAGAAATGGAATCTCTTtcctttgtttgaccaagaaataactcTCAGGAAAATGACGACACTggcatcgtgtggaagctgtaggaattgcaatctctgccttatttaatttggtgtcctttaaacaatacatgcaagtggcgcatggatattattttcagctttcagtgaccagtttttcttgcgctttttgatgaaacacacgctctgttatagtcacagccgtgatttaaccagttttagaaacttcagagtgttttctagccacacatactaatcatatgcagaTACTATATTCCTGGTATGAgcagcaggacgctgaaatgttgcgcgatttttaacagaatgttcgaaaaaggagggggtaagCTTAAATTGTCAACTACGTTAATCTTTGCTTGCCTAGCTAAGATTGTAGATAATGACTGACACATTTACACCTTATTAAATACTATTCTGGCAATAAAGCACTATCAATCTAACCAAAGTTCAAGTGTATAACGAATGGCCGTTCGTGCAGTTATTAACTGCTAACAGTCAACGTTATCTAGTTAAAATTAGCATGCTAACTTGGTTTGCCAACTTTCCAATTCaaattaacgttagctaaatTTAGCTTGCTAAGGAGAAAGGTAGACGggtataaacaaattaacttTACCTTTTAATACTGCGTGTGATATATGATCCATGCCAGGATATGTGTCATCCATTCCATCTTCATTCATGGTTTTGTTAGATGACTCAAAGATTTGGACCACCTTTGACTTTTTATGTATAGGTCTCCCTTATGTAGCTAGATAATGTGATGAACGTATGTCAGTTGGGTAATATCACAGAAGAGGGAGTGCTGAACATCAGCACGGCTGTGATTCGTAGGTCGTAGGTACGAGGCTGCAGGCCGAGTGCCGAAGATAATAATATTGAGTGTGATACTGCTTTTAAACAACAGTTCTACAAGCGCCATTTATTAGCTAACAGTAATAAGCTCCGCCAACACACATAGTTCCACAAATGGACTGGGACTGGACTGTTGCGAAGCACCACACAAACATTTTCCTGCACACTAGCTTGCTACTTTGTGTAGGTCTACACATTACCGTCCTCTCCTGACGACCATTCATAATTTAACTCAAATGTTATTTGTGGAAATATGTTCATCTTTGCGGTGCAAAGTTTgttacaatctaagatagataACGATCGTTAATGTAATTAACGGTTATTAGAACACATGTAAAACGGAGTGATACGTGTATAGTTTAAAGTCCCAGTGCTGTTCTCTACTCCAATACTTTGTCGCATTATAAATACTTCTGAACATCATTTTCAGTTCTTTTCGCCCTTTTCATCGAAAGCAGTGGAAACGTTTTACTTGCGTTTGCGTTTAGTAACATTCAAGATGCTTTGGCGGTGCGTTATCTGCTGCCTTTTTATGACTTTTCATTGAAACTGTTATTGAGCCATATCAATAGATGTCACAGCTCTGCGgcagggttgcctagtggttagggcgttggactagtaatcggaaggttgcaagttcaaaccaccgagctgacaaggtacaaatctgtcattctgcccctgaacaggcaattaacccactgtttctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaatatatatttttttctggttGCTCGGATACACTGAGGAATATAGAGTGTACAATTCCTTATATCATCATGTAAAGAGAAGACACCTTCAACACCTATTTGAACAGCCATCGGAGGAAAGCCAAGTACCACCGGaacaagtaataataataatctgtttcTTTGATATGTGGTACACAGGACAACATTCAACCCGATCAGCTTCTAGCTAACTCCAGCATCATTGATCAGCAACTCCATACATCTGACTCAGATGAAGGGCAAAGGGGCATTGACCAACATGGAGCTGTCACAGTGCAACAAGTTACTCGGTTGGTGGTAATCTACTGAAATTGACCATATTTTTTTAAGTACTTGGCTATACTAATAGCCTTCATAGTCAGTCTTCACAGCCACTTCTCCTGTCACAAACATTATACTTGTCATGAACTAGTCATGTCCAGCCTGCACTTGAATTCCATTTGGTCATTATCTGTCAGCATACTACATTCAATGTCAACTTTATTTTAGGATCTGACAACATATGCTACTGTTTTTGTGATAAATGCCATAGCCAAGCATCGTCTCTCACAGGTAAAATGCTTTTTCTGAACAGAGCACGGCATTTGGTTAGTTACATAATGCAGAGCATTTTGTAGTGGTTCAGTGATGGTTGAGTTCATTCTTAGTGCTAGGTTGTCCGCCTTACTATTGTTGATCCCTTATGTCCTTATGTTAATGAATATGTCATAAGCAGAATCTGTATATCATAAGTATACATGATGCTGTGTTCCAACCTCCATGAttaatgacctctctctctcgcttaaaCCATATGCAGGATGAAATGTGGAggatcaaaatattttttcttttaAGACAAATTATTTAATTATCCACCATTAGTCAAACGTCTGGAACAGTTCTTATCACACCCAAGGATTTTTTCAATGATTGAAAAGGGACCCCAGATGTGCAGGCAAAGTTTTTTTCATGACATTGTGGATGATGCTCTTCTAAAATCACATCCCTTATTTTCAGAGAAACCAAATGCATTGCAGATTGTTATGTACACGGATTAAATAGAGATCTGTAATCCACTAGGACTTTTGCATCAAAAAACAAGTTGTTAATTGTGTACTAAACCTTAGGAAATATAAATCCAAAATACAGGTCTAAACTGGCTGCTATCAGGCTACTTGACATTGCTAGATCAGCAGACCTCCGTCAATATGGTGTAGATGTAATGTTGAATAGAGTCAAGGAAGACCAGGATGCATTGTACAGTGCAAACTATTAACGGAGAGAAAACAATATATGGTGCCATGGTCTCTCTCTATAGAGACACTCTGGCACAACATGAACTAGCAGGGTTCAAAGAGGGTGTGGGCTTTGCCTACAGTAAGTGCAGACACTGCGTGTTCTTTTGAGGACATGCAGTCACACTTCAATGAGGATGCATATAATAAAAGGACATTGGAGAAGCATGTCAGACAATGTGATGAAATAGGAAAGTAAAAAACAGACTTGAGAACAACATACGGGATAAATAGAAGGAGCAAGTTAGTTGAATTCCCAGCATTTGTTATTATACAACAAACTATGCAAGACCTTATGCATATAATTCTGGAGGGCGAAGCCCCATTGGAAATCAAATGTGTTTTGAATAATCTTGTTGTGTCAGGACAGATTGATCTGATCTCAGTGAATTCTGCTATTCTTGGTTTCCCTTATTCCCCTTGAGATGTTACAGATCGGCCAATCCCAATTTATGTTAGTACATTAACGTCAAGTGATGGTAAACTAAAACAGTAATCTGGGCAAATGCTTGTCCTGATAAGGATATTGGCATTGTTTTGGAGAGTTTGGAAGTCAATGCATATATACAACTGATAAATGAGCTAATAGAAATTGTACAGATAGTATttgcacctgttctttccattgTGAATGTGTCTAGGTTGAAGTTACTCATTGAAAATCATTTGAAGCATTGGAAGGAGCTTTTTCCAGACCGCAATGTTACACATAAACAGCATTACATGATACATTTGCCATCACAGATAAAGTAATTGGGACCAATGg

Function

NR:

description
PREDICTED: uncharacterized protein LOC102079611

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1558554 True 4388 lncRNA 0.38 2 31692663 31697167

Neighbor

gene id symbol gene type direction distance location
LOC110491813 LOC106579422 coding downstream 196363 31474791 ~ 31496300 (-)
LOC110491807 LOC106576884 coding downstream 230418 31314091 ~ 31462245 (-)
LOC110491810 LOC106579441 coding downstream 385122 31305083 ~ 31307541 (-)
LOC110491809 p5cs coding downstream 407030 31270609 ~ 31285633 (-)
LOC110492870 ate1 coding downstream 509672 31130117 ~ 31182991 (-)
si:ch211-28p3.4 LOC106579421 coding upstream 15134 31712301 ~ 31728943 (-)
ttc34 ttc34 coding upstream 253352 31950519 ~ 31958002 (-)
LOC110491820 LOC106567387 coding upstream 269555 31966722 ~ 31989796 (-)
LOC110491822 LOC106567384 coding upstream 359781 32056948 ~ 32096133 (-)
LOC110491823 NA coding upstream 384540 32081707 ~ 32086786 (-)
G1363869 NA non-coding downstream 7712 31683294 ~ 31684951 (-)
G1363866 NA non-coding downstream 10334 31680147 ~ 31682329 (-)
G1363871 NA non-coding downstream 16647 31670438 ~ 31676016 (-)
G1363938 NA non-coding downstream 64970 31582420 ~ 31627693 (-)
G1363876 NA non-coding downstream 220131 31472331 ~ 31472532 (-)
G1363999 NA non-coding upstream 37654 31734821 ~ 31735092 (-)
G1364043 NA non-coding upstream 105983 31803150 ~ 31803378 (-)
G1364045 NA non-coding upstream 108344 31805511 ~ 31805767 (-)
G1364054 NA non-coding upstream 119506 31816673 ~ 31817115 (-)
G1364087 NA non-coding upstream 148953 31846120 ~ 31880306 (-)
G1363836 NA other downstream 41966 31639437 ~ 31650697 (-)
G1361619 NA other downstream 1767509 29923871 ~ 29925154 (-)
G1361290 NA other downstream 2195108 29497113 ~ 29497555 (-)
taok2b LOC106579406 other downstream 3511723 28177715 ~ 28237354 (-)
G1359763 NA other downstream 3528436 28163463 ~ 28164227 (-)
G1364105 NA other upstream 188582 31885749 ~ 31886112 (-)
G1364348 NA other upstream 321627 32018794 ~ 32019498 (-)
G1365099 NA other upstream 937298 32634465 ~ 32635511 (-)
G1366703 NA other upstream 1986844 33684011 ~ 33684473 (-)
G1366756 NA other upstream 2050233 33747400 ~ 33751407 (-)

Expression


Co-expression Network