Gene
RNA
| Item | Value |
|---|---|
| gene id | G1364087 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 31846120 ~ 31880306 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Transposon TX1 hypothetical protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1558805 | False | 211 | lncRNA | 0.37 | 5 | 31846120 | 31878767 |
| TU1558808 | False | 425 | lncRNA | 0.37 | 4 | 31846120 | 31880306 |
| TU1558809 | False | 163 | lncRNA | 0.37 | 2 | 31846220 | 31856988 |
| TU1558803 | False | 411 | lncRNA | 0.40 | 5 | 31854539 | 31857280 |
| TU1558807 | False | 872 | lncRNA | 0.41 | 9 | 31854539 | 31879955 |
| TU1558802 | False | 821 | lncRNA | 0.40 | 4 | 31876380 | 31880306 |
| TU1558804 | True | 739 | lncRNA | 0.39 | 2 | 31876380 | 31877438 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:ch211-28p3.4 | LOC106579421 | coding | downstream | 117177 | 31712301 ~ 31728943 (-) |
| LOC110491813 | LOC106579422 | coding | downstream | 349820 | 31474791 ~ 31496300 (-) |
| LOC110491807 | LOC106576884 | coding | downstream | 383875 | 31314091 ~ 31462245 (-) |
| LOC110491810 | LOC106579441 | coding | downstream | 538579 | 31305083 ~ 31307541 (-) |
| LOC110491809 | p5cs | coding | downstream | 560487 | 31270609 ~ 31285633 (-) |
| ttc34 | ttc34 | coding | upstream | 70213 | 31950519 ~ 31958002 (-) |
| LOC110491820 | LOC106567387 | coding | upstream | 86416 | 31966722 ~ 31989796 (-) |
| LOC110491822 | LOC106567384 | coding | upstream | 176642 | 32056948 ~ 32096133 (-) |
| LOC110491823 | NA | coding | upstream | 201401 | 32081707 ~ 32086786 (-) |
| LOC110491825 | LOC100380856 | coding | upstream | 349981 | 32230287 ~ 32350853 (-) |
| G1364054 | NA | non-coding | downstream | 29005 | 31816673 ~ 31817115 (-) |
| G1364045 | NA | non-coding | downstream | 40353 | 31805511 ~ 31805767 (-) |
| G1364043 | NA | non-coding | downstream | 42742 | 31803150 ~ 31803378 (-) |
| G1363999 | NA | non-coding | downstream | 111028 | 31734821 ~ 31735092 (-) |
| G1363868 | NA | non-coding | downstream | 148953 | 31692663 ~ 31697167 (-) |
| G1364100 | NA | non-coding | upstream | 712 | 31881018 ~ 31881391 (-) |
| G1364104 | NA | non-coding | upstream | 4031 | 31884337 ~ 31884701 (-) |
| G1364116 | NA | non-coding | upstream | 6195 | 31886501 ~ 31893966 (-) |
| G1364118 | NA | non-coding | upstream | 19534 | 31899840 ~ 31903310 (-) |
| G1364117 | NA | non-coding | upstream | 21188 | 31901494 ~ 31907490 (-) |
| G1363836 | NA | other | downstream | 195423 | 31639437 ~ 31650697 (-) |
| G1361619 | NA | other | downstream | 1920966 | 29923871 ~ 29925154 (-) |
| G1361290 | NA | other | downstream | 2348565 | 29497113 ~ 29497555 (-) |
| taok2b | LOC106579406 | other | downstream | 3665180 | 28177715 ~ 28237354 (-) |
| G1359763 | NA | other | downstream | 3681893 | 28163463 ~ 28164227 (-) |
| G1364105 | NA | other | upstream | 5443 | 31885749 ~ 31886112 (-) |
| G1364348 | NA | other | upstream | 138488 | 32018794 ~ 32019498 (-) |
| G1365099 | NA | other | upstream | 754159 | 32634465 ~ 32635511 (-) |
| G1366703 | NA | other | upstream | 1803705 | 33684011 ~ 33684473 (-) |
| G1366756 | NA | other | upstream | 1867094 | 33747400 ~ 33751407 (-) |
