G1364087


Basic Information

Item Value
gene id G1364087
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 31846120 ~ 31880306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1558805
agaaagaaagagagagaaagagagagagagagaaagaaagagagagaacaagagaaagaaagagagagaaagaaagagagagaaagagagagagaaagagagaaagagagagaaagagagagaacaagagaaagagaaagagaaagagagaaagagagagaaagaaagaagagagaaagagagagagaatgaaagaaagagagagaaagaa
>TU1558808
NNNNagaaagagagaaagaaagagagagaaagagagagcgaaagaaagagagagagagaaagagagagtgaaagaaagagagagagaaagagagagtgaaagaaagagagagagaaagagagagtgaaagaaagagagagagaaagagagagagagaaagggaaagagagagaaagaaagaaagagagagtgaaagaaagagagaaagagaaagaaagagagagagaaagaaagaaagagaaagaaagaaagcgagagaacaagagaaagagaaagaaagagagagaaagagaaagaaagagaaagaaagagagagaaagagagagaaagagagagaacaagagaaagagaaagagaaagagagaaagagagagaaagaaagaagagagaaagagagagagaatgaaagaaagagagagaaagaa
>TU1558809
gaaacaaagagagagaaagagaaagaaagagaaagagagaaagagagagaaagagagaaagagagagaaagagaaagaaagagagagaaagagaaagagagagaaagagaaagaaagcgagagaacaagagaaagagaagaaagagagagaagagagagagaa
>TU1558803
gaaagcgagagaaagagagagagaaagagagagagaaaaagaaagaaagaaagagagagaaagaaagaaagagaaagagagagaaagagagagagagaaagaaagcgagagaacaagagaaagagaaagaaagagagagaaagagagagtgagagagaaagcgagagaacaagagaaagagaaagaaagagagagaaagagagagagagagaaagagagagcgagagaacaagagaaagagaaagaaagagagagaaagagagagagagaaagaaagcgagagaacaagagaaagagagaaaaagggagagaaagaaagagagagaaagagagagagagcgagaaagagaaataaagagagagaaagagagagagaaagaaagagagagaaggagagagcgagagaaagag
>TU1558807
aaagaaagagagaaagagagaaagaaagcgagagaaagagagagagaaagaaagcgagagaacaagagaaagagaaagaaagagagagaaagagagagagagaaagaaagagagagaaagagaacaagagaaagagaaagagaaagaaagagagagaaagagagagagagagaaagaaagagagagaaggagagagaaagagagagaaagagagagagaaagagagagagagaaagagagagagagaaagagagagagagagaaagaaagcgagagaacaagagaaagagagagaaagagagagagaaagagagagagagaaagagagagagagagagagaaagaaagcgagagaacaagagaaagagagagaaagagagagagagagagagagagagagaaagaaagagagagaaagaaagcaagagaaagagagagagagaaagcgagagaaagagagagagagaaagagagagcgagagaaagaaagcgagagaacaagagaaagagagagaaagagagagagagaaagaaagcgagagaacaagagaaagaaagagagagaaagagagagagagaaagaaagagagagaacaagagaaagagagagagagaaagaaagcgagagaacaagagaaagagaaagaaagagagagaaagagagagagagagaaagagagagcgagagaacaagagaaagagaaagaaagagagagaaagagagagagagaaagaaagcgagagaacaagagaaagagagaaaaagggagagaaagaaagagagagaaagagagagagagcgagaaagagaaataaagagagagaaagagagagagaaagaaagagagagaaggagagagcgagagaaagag
>TU1558802
NNNNagaaagagagaaagaaagagagagaaagagagagcgaaagaaagagagagagagaaagagagagtgaaagaaagagagagagaaagagagagtgaaagaaagagagagagaaagagagagtgaaagaaagagagagagaaagagagagagagaaagggaaagagagagaaagaaagaaagagagagtgaaagaaagagagagaaagagagagagagagaaagaaagagagagaaagagagagaaagaaaagaaagagagagaaagaaagaaaaagagcgagagagagagagaaagagagaaagaaagagaagagataaagaaagcgagagaaagagagagaatgaaagaaagagcgagaaagagagagagaaagagagagaaagaaagaaagaaagagagaaagagagagaaagagagaaagagagagaaatagaaagaaagagagagaaagagaaagagagagaatgaaagaaagagagagaaagagagaaagaaagcgagagaacaagagaaagagaaagagagagaatatatcctgtactgcatCCTCTACCACATGATACAAATCACCATACACAAAAACCCTCTCCTACAACCGTATAtccaaaacatcttccccagcaatacagacagcccccccaacacaccatatctcctcaaaCATCTCCACACATTTGATAATTTTATAGAACTCAAACTCAACCCTAAGGCgcgcagagaccatcccattaaacagtagtaaagggtctgttatccccccacctttaaccctgttcctccttgttagccaaatagctaactttgcctgagcaaaca
>TU1558804
gagaaagagaaagaaagaaagagagagaaagaaagcaagagaacaagagaaagagaaagaaagaaagagagagaaagaaagagagagaaagagaaaaaaagagagaaagagagaaagaagagagagaaagaaagagagagaaagagagagagagaaagaaagagagagaaagagagagaaagaaagagagagaaagagagagagaaagagaaagagagagaatgaaagaaagagtgagaaagagagaaagaaagcgagagaacaagagaaagagaaagaaagagagagaaacagaaagagagagaaagagagagagaaagagaaagagagagaaagagagaaagagagagaaatagaaagaaagagagagaaagagaaagagagagaatgaaagaaagagagagaaagagagaaagaaagcgagagaacaagagaaagagaaagagagagaatatatcctgtactgcatCCTCTACCACATGATACAAATCACCATACACAAAAACCCTCTCCTACAACCGTATAtccaaaacatcttccccagcaatacagacagcccccccaacacaccatatctcctcaaaCATCTCCACACATTTGATAATTTTATAGAACTCAAACTCAACCCTAAGGCgcgcagagaccatcccattaaacagtagtaaagggtctgttatccccccacctttaaccctgttcctccttgttagccaaatagctaactttgcctgagcaaaca

Function

NR:

description
Transposon TX1 hypothetical protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1558805 False 211 lncRNA 0.37 5 31846120 31878767
TU1558808 False 425 lncRNA 0.37 4 31846120 31880306
TU1558809 False 163 lncRNA 0.37 2 31846220 31856988
TU1558803 False 411 lncRNA 0.40 5 31854539 31857280
TU1558807 False 872 lncRNA 0.41 9 31854539 31879955
TU1558802 False 821 lncRNA 0.40 4 31876380 31880306
TU1558804 True 739 lncRNA 0.39 2 31876380 31877438

Neighbor

gene id symbol gene type direction distance location
si:ch211-28p3.4 LOC106579421 coding downstream 117177 31712301 ~ 31728943 (-)
LOC110491813 LOC106579422 coding downstream 349820 31474791 ~ 31496300 (-)
LOC110491807 LOC106576884 coding downstream 383875 31314091 ~ 31462245 (-)
LOC110491810 LOC106579441 coding downstream 538579 31305083 ~ 31307541 (-)
LOC110491809 p5cs coding downstream 560487 31270609 ~ 31285633 (-)
ttc34 ttc34 coding upstream 70213 31950519 ~ 31958002 (-)
LOC110491820 LOC106567387 coding upstream 86416 31966722 ~ 31989796 (-)
LOC110491822 LOC106567384 coding upstream 176642 32056948 ~ 32096133 (-)
LOC110491823 NA coding upstream 201401 32081707 ~ 32086786 (-)
LOC110491825 LOC100380856 coding upstream 349981 32230287 ~ 32350853 (-)
G1364054 NA non-coding downstream 29005 31816673 ~ 31817115 (-)
G1364045 NA non-coding downstream 40353 31805511 ~ 31805767 (-)
G1364043 NA non-coding downstream 42742 31803150 ~ 31803378 (-)
G1363999 NA non-coding downstream 111028 31734821 ~ 31735092 (-)
G1363868 NA non-coding downstream 148953 31692663 ~ 31697167 (-)
G1364100 NA non-coding upstream 712 31881018 ~ 31881391 (-)
G1364104 NA non-coding upstream 4031 31884337 ~ 31884701 (-)
G1364116 NA non-coding upstream 6195 31886501 ~ 31893966 (-)
G1364118 NA non-coding upstream 19534 31899840 ~ 31903310 (-)
G1364117 NA non-coding upstream 21188 31901494 ~ 31907490 (-)
G1363836 NA other downstream 195423 31639437 ~ 31650697 (-)
G1361619 NA other downstream 1920966 29923871 ~ 29925154 (-)
G1361290 NA other downstream 2348565 29497113 ~ 29497555 (-)
taok2b LOC106579406 other downstream 3665180 28177715 ~ 28237354 (-)
G1359763 NA other downstream 3681893 28163463 ~ 28164227 (-)
G1364105 NA other upstream 5443 31885749 ~ 31886112 (-)
G1364348 NA other upstream 138488 32018794 ~ 32019498 (-)
G1365099 NA other upstream 754159 32634465 ~ 32635511 (-)
G1366703 NA other upstream 1803705 33684011 ~ 33684473 (-)
G1366756 NA other upstream 1867094 33747400 ~ 33751407 (-)

Expression


Co-expression Network